Genomic Location: Acropora_loripes_36:1693750...1710417
NR annotation: CAH3151628.1, unnamed protein product [Pocillopora meandrina]
| CDS | |||||
| alor_g11150.t1 | |||||
| Transcript |
| alor_g11150.t1 |
| Protein |
| alor_g11150.t1 |
| Uniprot term | Description |
|---|---|
| Q9DG67 | DNA repair and recombination protein RAD54B OS=Gallus gallus OX=9031 GN=RAD54B PE=2 SV=1 |
| Q9Y620 | DNA repair and recombination protein RAD54B OS=Homo sapiens OX=9606 GN=RAD54B PE=1 SV=1 |
| Q6PFE3 | DNA repair and recombination protein RAD54B OS=Mus musculus OX=10090 GN=Rad54b PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00176 | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF00059 | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR049730 | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR001304 | Domain | C-type lectin-like | Interproscan |
| IPR000330 | Domain | SNF2, N-terminal | Interproscan |
| IPR038718 | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR018378 | Conserved_site | C-type lectin, conserved site | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR050496 | Family | SNF2/RAD54 Helicase and DNA Repair | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45629 | SNF2/RAD54 FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0140658 | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| GO:0000724 | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0007131 | Biological Process | reciprocal meiotic recombination | Interproscan |
| GO:0015616 | Molecular Function | DNA translocase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11654 | SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 | EC:5.6.2.- | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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