Gene detail

Detailed information of alor_g11715.t2 in Acropora loripes

Genomic Location: Acropora_loripes_7:2365255...2375877
NR annotation: XP_044173360.1, LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g11715.t2

ATGAAGCTTAATAAAGGACCCAGAGGATTTGGTTTCAGTTTGGTGGCTGCTCCAACATTTAATTCTAATGTGCAAGGGATATTTATCAAAACTATCAGCCCTGGAAGTGTAGCTGAAAGTGATGGAAGGTTGAAAGTTGGAGACCAGATATTAAAAGTCAATAATGAAGATGTTCAAGGATTGAGTCATGCGAAAGTTATTGGAATGCTAAGAAAGGTTACAGGAACAGTGGAACTGGAAATCAAAAGACCTTCAAAGCTGTACAATATGGCAGATACTGTGACCAGCCCTCCCTTATCTCCTCCTGGGTCTTCAGCACCTTCTACAAGAAACACACCTGAAAGAACACCTGCTTTGTTGGACCTTGATATCACTTTAGAGGATAAGGATAAGACACTGATTGAAACAGCAAACAATGAAGATGAAGATGATGTTGTCGAACTTTTGAATGCCATATCAGCTGCAAATGAAAATGTCTCACTACCCACAATTCAGTCCAAACCAAAGCTTCATAAAAGAAATACTGATGCACTGTTGTCCTCCCTTTTGGAGAATCTGGAACCACCTTCGTCACCTCCAGAATCAGTGGCTTCGGCAGACCCACGCGAGTTTGATTCCCAGTGGGAGAGCCCTTACATTGACAGTGATGCCTCTCCTATTAAAGAATCAACTAAATCGTGGCGAGAATTGAGGGGATCATACCATGGTAGGAGTACTAGTGAAGCTTCCAGTGATAGGCACTCAGTGGATCAAGCTAGTTCAAAGCATTTGCCTCTGGATTCTGTTACTGAGGAAATTGCAGTCAGCACGAACATTGATCTCAGTAGTTGTGATGATGAGAAGGATGACGATGACATGAATACAGATGATGATGATGTGTTTGACATGTTACGTGACAACAGTCAGCTTGTTATAGGAATGCTAAACAATAGCAATCCTCCGCCAAGTGAAACAGTAATTGACGAGAATGAAGGAAAAATGGAAAGTCATGCGTCTGATATTTCTGTGGAAGTTATGGACCCACTTCCTGATGGGCCACCACCAATTCCTACCACCCCTCTGCCATCAGATGATGACGAGCCACCTTTTAAACCACCACCAAGGAGGGAATCGCTGCCCAGGTTTTCAGAAAATGATTATTACCAGGGAGATGTTGATGCTGAAGTACATGCAATAAACGGGTCAGTTAGCAGACATGACAGCCATGAAGAAGAACAAGTTCCATCAGATCCGTTGATTGATGTGCTTGATGGTGGTCGTTATACAGGAGAGCAGCTTGCTCACCTCATCAGTGATTTACAAGAAAAACTTGAATCCGATACTCCTTCAGAAGAATTTAAGGCATTGAGGGAGATTAAACCAACAGATGGGTGTGATTCAGGAAAAAGGGCAACTAATAAGGACAAGAATAGATTCCGAAATGTTCTACCATTTGAGAAAACAAGAGTCAAACTCAACAGAGAAGGCAGTAATGATTACATCAATGCTAGCCATATCAAGGTTCCAGTGGGTGATGACATTTATCACTACATTGCCACTCAGGGACCTCTTCCAAATACCACACACGATTTCTGGCAAATGGTGTGGGAGCAAGAGGCTGTAGTTATTGCAATGATAACTCAGGAGCAAGAGGCAGGAAAGGTCAAGTGTCACAGATATTGGCCTGAAGAGCAACCTTTAGTTTTTGAAAGAAGTTTTTCTGTCAGCCTCCAAAGAAAAGAAGACTTTGGTTCTTTCATTGAAAGAGAATTTGAAATCAGCAACATGCAGAGTGGCGATACCAAGACTGTCTTCCACATCAACTTCATCACATGGCCGGATCATGGTGTTCCCAAGTCTGCTGTGGAGTTAGTGGAGTTTGTGCGATTTTTGAGACTTCTAGCTGAGGGCCCTGGGCCAGTAGTCGTCCATTGCAGTGCTGGAATTGGTCGAACAGGGACTCTCATTACCATTGATGCAGCCTTGGGCCTCATGGAAAGAGATTTATCGGTTGATGTTAACAAGATTGTTAGAAATCTTCGTGAACAGCGCCAAGGGATGATTCAGACAAAAGATCAGTACATTTTCTGTTACAATGCTTGTCTGGAAGTTCTGCAGTCACTGAATGCTAGATAG

Transcript

alor_g11715.t2

Protein

Uniprot

Uniprot term	Description
Q12923	Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2
Q64512	Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2
O55082	Tyrosine-protein phosphatase non-receptor type 20 OS=Mus musculus OX=10090 GN=Ptpn20 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR052074	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan