Gene detail

Detailed information of alor_g12366.t1 in Acropora loripes

Genomic Location: Acropora_loripes_15:1765542...1777877
NR annotation: XP_044175025.1, zinc finger CCCH domain-containing protein 18-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g12366.t1

ATGGACATCCAATCAAGTGAAATCCCTGGAAAAAGTGACAGTAATAAAAGTGTTTCTTCATCGAATTCTCTTGGAGATAGAAGTTTACCGGAGCATACAGAAGGGGTGGCATTAAAGAATGAAGAGAAAGATAAAAAAATTGGTGAAAGGGTTCAGGACATGGTACATGATAGTAAAAGTAGTAAATCTGAATGGACAACTTCCACTGCAAGCATTCATTTGACAACCAGTGTCGGTAGCAAAGCTGAGGTGTTTGAAGAAGAGGAAGAAGGTGAACTTGACTATGAGGAGGATGATGGTGAAATTGCAGCAGTACAACAAGATAGAAATGGGATTAAAAGTGACTATGATGGTGATAAAGAAGAAGGTGAATTGGAGAATGATGAGCAGGAGGAGGGCGAAGAAGGAGAAATTCTGTCAGATGAAGATAATAAGGCTGTTACAGATGTAAAACTTGAAGAGAAACGCAACATACCAGATGAGGCTGATGGCCCAGAAGAGGGAGAAGTTATTGAAGAAGGAGATTCCTCAGGAGTGTCATCATTGAGGAAGAAAGTCTGCAGATATTTCATGTATGGTGCATATCAGATGCTACCCGTTCCTGGTCAATATCCTAGCCCATTTCCAAAACCACCAGCAATTTCTTCTCCAGTCCCAACTGAAGCCATTGTGCAAGCCAGTACAATGCCACCTTTTATTGAGCACGATCAACAGGAGGAAATGGCCATACCTGATCCCCCATTGGTGCCCAAGAAAGAGACAGCTTGGGAAAGAGGATTGAAATTAGCAAAAGAAATAAAAAAAGCAGCGCAGAAGCGTAAAGAGGAAGACGCTGACTTCGAGGAGAAGCGTATGATACTCGGCATCACGGTTGACGATAATGACGATGAAAATGACAAAGAAAACTTGGCTCGACGACGCGAGCTGATGCGTTCCAGGCTGGAGAAAGATCTAATTTTTGATGAGGATGAATCCAGGTACCGTCGGGGAGGGGATATTGTGTCACGATGGAGAGACAAGCGGCCGACATCACCCGTGCAGTTCAAGGATCGTGACAGGCGAAAACGAAGAGGAAATCGAACACCATCTTCTTCACCTGAAAGAGAAAGGAGGAATAGGCGAAGAACTGGGGACAAGGAAAGACCAAAGGCAAAGAGCAAGGATACGACAAGAGACCGTGACAAGGAGCAGATCAGTAAACCAGTGAACAAGGAGCCTGATGTAAAACGAGAGGAAAAGGTCAAGAAACAGAAGGAAAAAGATCAAGACACTGTAGAAGAGAAACAACCGATGCAACAAGGGAAAAAAGAGAGTGAAGTCGCGGAGGAGAAGAGCACCAAGGAGAAGGAACAAGTTGATACAGAAGTGAAACAACAGCGACAAGAAAGAGCAGAGCAAAGGAAATTGGAGCCGGATGATAAAGGAAAGTTGAAAGTACCGGAAAAAACCGAAAATAATGATATTAAACCCACCACAGAAACAGATAGCAAAATGGATTTAAATGACAGTGCAGCTTTAGAAAAGGACAAATTAAAAACAAAGGTACTCGGTATTTCAAGCTCGAGGTTACCGAATGATGAATGGATGGATCCATGGCAAAGAACAACCTCTCCCAAACGACATTCTGTGTCTTCAGCTAGTTCCAGAAGTCGATCATCCTCGTCCTCCTCGGATTCGTCACGATCTTCACGGTCACGTTCACGTTCAGGATCCGAGTCACGCTCCTCCTCGCACTCCGCTTCCCGTTCTCGGTCACGCTCAGTATCGCAAACGCCTTCCAGGTCTCCTTCACGGTCACGGTCTGGTTCGCGATCCAAGTCTCGTTCCCGATCAGGTTCAGCTTCATCGGCGAGTGAGCATTCCAGCTCATCGAGCAGCAAAAGTGTAACAGCAGAGGTGAAAGAAAACGAGGGAGGGGAGGAGAGATCCCCAAAGCAAGCTTCGCACGACTCCTCAGAATCCGAATCGGGATCTGAATCCAATAAATCAATATCCAAATCGCCAACACCCGTTACTAAAAGCCCTGTGAAACCAAAACCCGCCGCAGACAAAGGGCCGCGAACTCCGCCAAAGGAATCCACTTTGAGTCGCAGTTTCAAGGACGTTAAGGAAAGAAAACATCGCATTGAGTATGGCAGAGGAGACAGAATAGAGAAATGGCGGGAAGGGCAGATGCGGCAGGTTGCACCGTCCAATAGACGAATGGACGTGACAAGGCCACCGGGTGATCATTACAGGGATCGTGGCCATTATTCTCGAAGGAGGAGAACTCCAGACAGACGCAGGAGGTCGCGATCACCCACACGAGCCAGGATTGGAGATCGCCGTCGCCTCGACGAAGGAAGAGCTCGGGAACGATCTTCAAGTGCTGATAGCATGGAGCACGCATTGGCTCGGCCAAGTTCTCCGCGTCCTTTACGAGAGCGCGGTGGAATGCGTCGCGGTTCAAGTGCGTCATCCAGCGGCAGTGAGAGTGCTAGCAGTGACTCAGGCAGTGAATCAGAGGAAGAACGTCACCCGGTCAGAACACGCCGAGCAGGGCCCGAGGCTGAAAAAGTCAAGCGCAATATACCGCTTTCCAGTGGGAATATCAGATACACCGGCCACAAAGATATTAAACTGACTTTGAATAAGTCTGTACCAAGGCCAGACAGAGGTGAGGCTAAGCCGCCTTCCCATCATCCCCCGCCGGATAGAACAGAAATCAGCAACAATGAAAAGCAAGCACTTGCTAAGAAACGTCCACGTGATTCGTCGCCAGTCCTTGACGCTTCAAGCCATGGCAGGGAGGCGGTATCGTCATCTGTGTCAGCGGGAACCTCAAACAAAGCCGATAGAAGATCGACAGATACGCAAGTTGACGCAGCTACTTCGGGAAAAGCAAATACCGCAAATACTTCATCCAGGAGAGAAGAACTCCTCCGTGAACTGAAAGCTGTTGAAGATGCAATCGCTCGAAAGCGAGCGAGAATCGAATAG

Transcript

alor_g12366.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR052647	Family	Zinc finger CCCH-type domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46582	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13092	ZC3H18; nuclear protein NHN1	-	Spliceosome	ko03041	deepkoala