Gene detail

Detailed information of alor_g1237.t1 in Acropora loripes

Genomic Location: Acropora_loripes_8:1289012...1316089
NR annotation: XP_044175794.1, transcription initiation factor TFIID subunit 4-like [Acropora millepora]
Species abbreviation ALORI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alor_g1237.t1

ATGGCGTCTTCCTTTCTAGACGACCTATTCGGGAAAGAAGTTGATGAGAAGGAGGTCAGTGCGATGGTGGGATCGCTGGAAAGCCAGTTGGCATCAACAGCGATCCCTAGATCTCATCATAATGAAGTTAAACCTTCGGTAGTGACTTCCAAGGCCAGCCCTAAACTAAGCAAGACACCAAACCAAGCCAGTCCTATTCAAAATCAATCCTCAACTGGAGTTCGTCCGGGCATTCCTTCATCCCCGGTGCTTAGCGCTGGCGGAAACGCCGCGATTACCACCGTTATAAACATCGCACCGCGTCCAACAGTTACTACGGCCGTACCTTTGGCTCCTCGACCTGCAACTATGGCTGTTCTTGCTCCGAACTCTGGTTTCGCGGGAGCCCCTCGCTACGTTACTACCATGATTAACGCGGACATGGTTAACAGAGGCATAAATTTAATCTCACCTCAGCAAATCGCGCTGGCTCCACGGGTCGTGGCTGGAAATGTGAATGTACCCGGAAATCCTCAAAATATTGCAGGACCGCGAATAATTCAGCAAATTCAACCACGGGTCACAAACATGTCTATTAGGCCCGTTTCTCCCCAAGTTGTTCTGCAACAAGCGGCGGCGGCGGCGGCGGCGACCAGCTCGCCCATACAACAGGACAAGAAAGTGAATATATTGCAAACTCCGATTCGTCCTGTCCCGGCGAGTGTTAGCGTTTCTCCGAATGTCCCAATCAGGACTACACTAACCCCTATTCGTCCTCAAATTAGTACAATACCGCAGGGAACTATCACGTATAGAATCCCTGTAAACCAAGTTGCTGTCGCAACACCAAATACTCAGATCACGTCAACAGAAGCCACCGTGACAAAAAATTCGAACACTTCCAATGTAAGTATGCGGGTTACTCCACCTGGAACAGTAGCACCTTCTCTGCAAGGTGTTAATAACGTCAGCGTAGCTGGGGCGCAGAGCAAGACCCCTCAGCCGTCAAGTGCATCTCTGACAGTCCCACATTCCCAGCCACAGGTGAATGCGGCCCAAATTGAACATGTGAAAGAACAAGCACTCAAATTAAAGAATTTCTTTAGTAACTTGATTAGGCTTGCATCAGATCAAAAATCTCCTGATGTTGGCAAGACAGTGAAAGAACTGGTCCAAGGTGTCATGGAAGGAAAGCTAACTGAAGAACAGTTTGCAACAACTCTCCAAGCAACACTCAATTCGCCACCTCAACCAAATCTTGTTGGCTTTTTAAAGAAAACGCTACCATTATTGCGCGCACAGACAAGGTTGCCACAGTCAAACACGCCACACAAGCAACTCATTCAACAAAAGCCTGGCACTCCTGCGCCTGCTATCTCTCAGCCTGGACAAAAGCCCAATAGCCAGGTGCAAAAGATCCATATAGTGTCACAGCAGGGTCAGCAGATGCTGAAACAAGTTATTTTTACACATGCACAACAGCAGCAGCTTAATGCTCAAAGAGTGCTTCTAAGAACGCCAACGGGTACAGTGCCTGTTTCTCGAGAGATCACCTCTTCGCAGAATGTGGTCATGCTGCAAAGCACACCTGGAAGAATGGGAACTAAAATGGTTGTTGCTCCCGTGAGAACTCAGGCGGGGACAGCGGCTGCTTCTGCGGCAGCCACTGATAAACTTAAGCCCAAGGGTTTTACTGGAATTAGCAGTAGTGGAGATGATGATATAAATGATGTCACATCTATGGCTGGAGTTAATTTAATGGAAGAAAGCCAAAGAATTTTGGCAATCAATTCGGAATTACTAAGCACACAAACAAGGAGCTGTAAAGATGAACCCTTTTTAAACACATCACCCCTCCAGAAGAAATTAGAAGCGTTAGGTCAGTCACACAAGAATGGTTTATCGGAAGTCTCTCAAGAAGTTCTTAGTTTAGTATCACATGCTGCAGAGCAAAGACTGCGGAACATTTTAGAAAAAATATCCACCTTAAGTTTGCATCGACTCGAAGTTTATCGGGATGATCCGATGTATGAAGTGGGCCTCGACATCAGGTCTCAACTCAGAGTCTTCGAGCAGATTGACGAAGTAGAACGAAAAAAAAGAGATGCTAGAGAAAGGGACATTTTAATGCGCGCGGCTAGAAGCCGGGCGAGACAAGAGGACCCGGAGCAAGCTAGACTCAAAGAGAAAGCCAAACAGCTTCAACAAGAGGAAGAAGAATTAATTCGAAAACGGGCAGCTAATTCAACGGCGCTGGCCGCCATTGGGCCGAGAAAAAAGAGAAAACTGGATGACGCTCTTGAAGGAGGCTCTTCTTCGACGAGTACGGCTTCATCTTCCAATTCCTCGACATCTTCTTCCACTAGTTTACAAGGAAATCAAAAAGACCTTCGGCAACAGGTTCCTCGCCAAAGAATGCGACGAGTTCTTCTCAAGGATCTTCTATTTGTTATGGAACAAGAAAAAGAGACAACCAAATCGTTACTATTAGGAAATTCGAATGACACTGACTTGGATCCAAACGCTACGGCAAGTCCTCTTCCTGTCCTTACGACAAAAACTCCCCCAACAACGATTCAACCGGCAGAAGAAATACCGGAACCACCCGAAGTCGAACAGCATAGTTCTATGACAATATTTTTCATTCTTTTGGTCGTAGCCCTTTGTATCCTATTAATTCACTTCTTGCTGAAGACTAAATTTCACTACTTACCAGAGAGTGTGGCCATTGTATTTTTGGGTGCTCTGGTTGGCCTCATCATAAAAGCCTTGAGCCATTTTGACCTGGGGGATTGGCGGAAAGAAGAGCATTTCAATCCAACTGCCTTTTTTTTGATTTTGTTGCCTCCAATTATTTTTGACTCTGGGTATTCTCTTCACAAGGGTAATTTCTTCGCTAATATTGGATCAATTCTTGTCTTTGCTGTGTTTGGGACAGCTGTATCTGCTATTGTCATTGGAGGTGGTATCTATTTATTGGGGAAGGGAGGAGTGGCATTTCAGCTTGATTTACGAGAGAGCTTTGCATTTGGTTCACTAATCTCTGCAGTTGATCCAGTTGCAACACTTGCCATCTTTCATGCACTGGATGTCGATCCAACTCTGAACATGTTGGTGTTTGGAGAAAGCATTCTCAACGATGCAGTTTCTATCGTCATGACAAACACTATACTCGAAATGGGCTCTACCCAATATGCAAACAGCAGCTCATTTGAGACTTTCTTCTCCGCTGTGGGAAATTTCCTGGTGATGTTTTCTGGATCAGCAGCCATTGGAATTGTATTTGCTTTAATTAGTGCATTGCTATTAAAGCATGTTGATCTGCGAACCACACCGTCTCTTGAACTTGGTACAATGCTGATTTTCTCATATGCTCCTTATGGCTTGGCCGAGGGTCTTAAGTTATCAGGCATTATGGCTATTTTATTTTGTGGAATTGTCATGTCACATTATACACATTTTAACTTATCGCCAATGACTCAGATAACAGTGCAGCAAATATTTCGTACAACAGCTTTCATGGCAGAGACGTGCGTATTTGCTTATCTAGGAATGGCAATTTTTAGCTTCAGGCATCAGTTTAGACCAGCGTTTGTCATCTGGACAATAATTTTGTGTCTATTTGGAAGAGCGGTGAACATTTTTCCTCTTTCTTCAATTGTGAATCAATTTAGAGATACCAGAATTGCAAGAAAGACGCAATTCATCATGTGGTTTAGTGGGCTTCGAGGTGCTGTGGCATTTGCTCTTGTGCTTCATCTCCAGCTGGATGACGAGAAGAGACATGTCCTCGTTACATCGACACTTATTATTATCATGTTCACTATTCTGTGTTTAGGTGGATCAACTCTTCCATTACTTAAGTTGCTTAAGGCGGAACAAGGCATGAAGAAAGGCTTGACACTTAGCAAAACGCAGACAGAGGGTAAAGCTGTGGATGCGGACCAACTTACAGATGACGAGTGGAGAATAAGCAGCCGAAAAGCGCTGAAAGGCTTCACACGACTGGATGCCAAATACTTCATTCCTTTCTTTACCAGGAAGTTTACCAGACAGGAGGTTCGCAGTGCGCACGCGGAAATGCAGAGGCTAACAAGTCAGTTATATGGTGAAGTACACAGCGATGTGGCCTCAGAAGATGATGCAGAGAACATTCAACTTGTGGGACTTGATCAGGGTCGTACACAGTTTGGAGACAGTAGAATCATCAAAACTTTGGAGGCTTCACTTTGGAGAGAACAAGACGGGAAAGATTTTTATAATCAGCAGACGGTGACGGGTGAGGAAGAGATGGAACAGTGA

Transcript

alor_g1237.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2E8	Sodium/hydrogen exchanger 8 OS=Homo sapiens OX=9606 GN=SLC9A8 PE=1 SV=4
Q4L208	Sodium/hydrogen exchanger 8 OS=Rattus norvegicus OX=10116 GN=Slc9a8 PE=1 SV=1
Q8R4D1	Sodium/hydrogen exchanger 8 OS=Mus musculus OX=10090 GN=Slc9a8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05236 all species →	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR007900 all species →	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan
IPR004709 all species →	Family	Na+/H+ exchanger	Interproscan
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0006885 all species →	Biological Process	regulation of pH	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14724	SLC9A8, NHE8; solute carrier family 9 (sodium/hydrogen exchanger), member 8	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.