Gene detail

Detailed information of alor_g14426.t1 in Acropora loripes

Genomic Location: Acropora_loripes_37:521333...556477
NR annotation: XP_029203579.2, outer dynein arm-docking complex subunit 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g14426.t1

ATGACGTCCAACGACTCTGCAGTTTCTGCCACAGCGATTTACGTCGAGAACTATTTGGAATGTGTGGAATCTCTGCCTGATGACATGCAAAGAAACATATCTCAGATGAGAGAGCTGGATCTTCACTATCGGGAGAGGTTGAAAGAAATTGAGAGACACATTAATAATTACTTCAAAGAAAAGGATCCCTCAGCAAGGAGAAAATGGCTGGTTCAGATACAAAGGCGACTCGTTAGGAGCCAAGAATACGGAGACGACAAGCTTCAGTTGGTTGGAAATATGATTGACTTGGTGGATACCAGAACTCGGCAAATTGAAGTAGATGTGGAAAACCTTGACACGTGTCGGAACGAAGACTTACCGCCGTTATTGAAACAAGAGGCACAACCAGCCATTTTGGAGGAACATCATGCCAAACCTACTGAAAAGACAAAACGTAACCGGAGACAGCGTAACCACGATAAGCACGAGCGTGACTCAGAGGGGAGGGGAGGGCCAAGTGGAGCCACTGGATCAGAAAGTGTCAAACCGGTCAAAAAGAAAGCCAAGACTAGTCGGAAGGGCAAATCAAAGAACCAAGGCTCTCCTACTCCAGAATTTCCCATTGATCCCAATGAGCCGACCTACTGTTTGTGTAATCAGGTCTCATTTGGTGAGATGATTGGATGTGACAATGACGAGTGTCCGATTGAGTGGTTTCACTTTCAATGTGTTGGCCTGACTACAAAACCAAAAGGGAAATGGTACTGCCCAAAAGAAAAAGATATGGGGGCAGTTACATCCAGTTATAGACAAGGAAGTGTAGTCAGTGAGCATGGCAAGGGAAAGCTGGAATTCACACCACAGAACGAAGTGCTACTCAATGATATTGTCAAGCAGGTAGAGATGCTCGTGAGTTCGCATCCTCGCGAGGCAGAGACAGTTCTCAAAGAGCCCTTCAAGTGGCACAGTACCCTCAAACCGGACGACTTTGGAGCGCTAAACTTTGGATCAATGGGATTTCAGATAACTCACAGTGATGTGAAATCTGAGGGAACAACACCAAATGGAGAACATTTGCTGTCAATGGATAAGGATGGTGATCAATTTGTTCTGAAAGTCTGGACATTTGAACACCTAAACAGTGTGCTGAAAGTTGCTGGAGAAGGCAAATGCCAAGAGACCCAAGCTTGCCTGGAAGAAAATCAAGATCCCATGGTAAACATCATGGGTGCTGCTTATGCGTCTGTCAGTGCCAGCGACAGGCCTCTGTTAAAGGCGCATTCTGACCTGAGCAAAGCACGAGAAGACTCTGCTGAAAATGTTGAGGAACAGGAAGCTAGATTCACTTTGTCGCTGCTCATCAGTGAAATGGACAAACAGCTGCTGTTGTCGTCGCATCAGACTATTGCCAAGGAGGTTAGGTTAAACCCAAGTACTGTGCAGGCTGACTATGAGCTTTTGAAATCTTTTGCTGGGGAAGAAGGAAAATATCTGGAATTTATTGAATGGACACTTGATCACCAGTTCAGCAATGGATGCCATGCCCCTCCGTGGCAGCAAGTTCATGGAGATATCAGCTATTTAGATGTCAAGCCTTTTGATTGTGATAAGCTGACCATCACTGCAAACACGGCTGGTTATTTTCTAAACAAAGGCCTGACTCAAGATGGGCAGGTCAACTATGAGAGAGACGGTGAAGTGTACCCTACACTTGTGGCACTACTTAAAGCTAAGAGCCCACAGTTTGCCTCAGCTATTGACAAAAAGGAGTTTACTTATTATGGCTCAACAGAAGTGAAGCAAGACAAGATTGAAAAGTTTGACGAGTCTTTGAAGGAAGACGAAACCAAGGGATTTGTAGGAGATGAAACAACAAATGGCGTGGAGGATAAAAACAAACAAAATGCGGCTACAAAAGCCAAAATCACCAAAGGCGCTCAAAAGAAGAAGGCAACCAAAGGAGGAAAGACTTTTGATCCTTCCCCACGCTGGAGGAACATCAACATCGAAGTCTCCTCAGATCTAGCAGGGACTGATGCTAAAAAGGACCAACAAAAAGGAAGTACCCCTGATAAGAAACCAGGATCCAGGCAAACGAAGAGCAGAGAGGTAGTAAAGCCTGGCCGTGTATCCGTTCGCTCACAAGGGAGGGGTGATGTGGAAGAAGACTTCAGTGAGAGCTCATCGGAGAGCGAAGAAGAGGAAGAGAGCCAAGATAGAAGACAGGAGTCTAATGCCGATCTCCCCTCAGAGTATTGGCAAATACAGAAACTGGTGAAGTATTTGAAGAGCGGGAATCAGACGGCAACTATCATAGCTCTGTGTGCCATGAGAGACTTCAATCTGCAGCAAGAGACGTGCCAGCTGGCAATAAGAGATGTAGGAGGACTTGAAGTGTTGATAAACCTACTGGAAACGGATGAAATCAAGTGCAAGATTGGGTCTTTAAAGATCCTTAGAGAGATCTCAAGGAATTCCCTCATTCGAAAGGCGATTGCTGATTTAGGAGGCCTACAAACCATGGTCAAACTCCTGCTTGGATATAATGAAGAACTGAAGTGCTTAGCTGCGGAGACGATCGCTCATGTTGCTAAATTCAGAAGAGCAAGGCGCACAGTGAGACAGTATGGTGGAATACGAAAGTTGGTGTCACTCCTGGATTGCGGAACCCTAGTGAATGCATCTGACCTGGAAGCTGACGTCGCTCGATGTGGAGCCTTAGCTCTTTGGAGCTGCAGCAAAAGCACTAAAAACAAACAAGCAATCCGCAAAGCAGGTGGAATACCTCTCTTGGCTCGATTACTCAAGTCCAACAATGAAGCAATGCTGATTCCTGTGGTGGGGACACTTCAGGAGTGTGCTACGGAGCCCAGCTACAGGCTTGCAATTCGCACAGAGGGTATGATAGAGGACCTAGTGAGAAACTTAAGGAGTGAAAACCAAGAACTGCAAATGCATTGTGCCAGCGCCATATTCAAGTGCGCAGAGGACAATGAAACCCGCGAGCTTGTTCGAAAATTCGGAGGCCTGGACCCTCTGGTGTCTTTGTCATTCAATGTTGAAAATAAAGAGTTACTCGCCGCCGCTACAGGCGCCATATGGAAATGTTCAATCAATCTAGAAAACGTAACAAGATTTCAAGAATTGAAAGCCATCGAGCAGTTGGTATCTTTGCTGAACGAGCAGCCCGAAGAGGTGTTGATCAATGTTGTGGGGTCCTTGGGCGAGTGTGCGCAAATTCCTGCCAACAGAACAACAATACGAAAAGCAGGAGGCATACCTTCACTGGTGAACCTGCTGACCAGTACAAACCAGGCTCTTCTAGTCAATGTCACCAATGCAGTGGGAGCCTGTGCCACCGAGCCTGATAACATGTCTATCATCGATCGTCTCGACGGAGTGCGTCTTCTCTGGTCCTTACTGAAATCCAACAACCCAAAGGTGCAGTCGAGTGCTGCATGGGCAATTTGTCCTTGCATCGAAAATGCTAAGGACGCTGGCGAAATGGTGCGCTCTTTTGTTGGAGGTCTCGAACTAATTGTTAGTCTGTTGAAATCCAATGACAGAGAGGTGTTGGCGAGTGTTTGCGCTGCAATTGCGAACATAGCAAAGGATGAAGAAAACTTGGCGGTGATCACCGATCATGGTGTGGTACCTATGCTGGCCAAGCTTGCTACAACGACTGACGACCGTCTGCGCCAGTATTTAGCAGAGTCCATTGCTAGGTGTTGTACATGGGGAAACAATCGAGTCTCATTTGGTCGCGCAGGCGCTGTTCCACCTCTGGTAAACTATCTGAAATCCAAGAACCCGGATGTACATAGAGCGACTGCGCGTGCGCTGCATCAGCTTTCACGTGATCCAGACAACTGTATCTCCATGCATAACAGTGACGTTGTGAAGTATCTTCTTGAAATGGTTGGCTCCACGGACAATGTTCTGCAAGAGGCCGCCGCTGGTTGCCTTGGCAACATCAGGAGACTTGCATTAGCCAATGAGAAGGCTCGCTACAACTGA

Transcript

alor_g14426.t1

Protein

Uniprot

Gene family

Uniprot term	Description
E1B8W3	Outer dynein arm-docking complex subunit 2 OS=Bos taurus OX=9913 GN=ODAD2 PE=1 SV=3
Q5T2S8	Outer dynein arm-docking complex subunit 2 OS=Homo sapiens OX=9606 GN=ODAD2 PE=1 SV=1
B2RY50	Outer dynein arm-docking complex subunit 2 OS=Mus musculus OX=10090 GN=Odad2 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF12998	ING	Inhibitor of growth proteins N-terminal histone-binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225	Repeat	Armadillo	Interproscan
IPR028643	Domain	Inhibitor of growth protein 1, PHD-type zinc finger	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR023231	Homologous_superfamily	GSKIP domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR024610	Domain	Inhibitor of growth protein, N-terminal histone-binding	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46241	ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24125	ODAD2, ARMC4; outer dynein arm-docking complex subunit 2	-	Cilium and associated proteins	ko03037	deepkoala