Gene detail

Detailed information of alor_g14558.t1 in Acropora loripes

Genomic Location: Acropora_loripes_109:282101...301990
NR annotation: XP_029194468.2, WD repeat domain phosphoinositide-interacting protein 4-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g14558.t1

ATGACCAGAAGAAACGACGTGTTTCATATAGATTTCAATCAAGACCAAGGTTGTTTTTCCTGCACTATGGAGGGTGGGTTTCGGATATATAATGTGGAGCCTTTATCAGAAAAAGCTCGTGTTGATTTAAATGAGCCATGTCAAATCTCTCAGACACACATGATGCACAGATGCAATTTGGTGGCCATTGTGGGTACAGGCCCAGGGGCAAAGTTTTTTAATGACAAAGTTTATATTTGGGATGATGTACTTAAAGAGCTTGTAATGGAACTATCATTTGGCTGTCCAGTTATGAGTGTCAAAATGCGAAGAGACAAGCTTTTTGTTATTTTCAAGACAAGAATTCAAGTGTTTTCATTCCCTCAAGATCCAAAATTGCTTTTTTACTTTGACACAAGAGAGAACCCTAAAGGTCTGTGTGTAGTGTGCCCAAGTACTGACAGACCCTTGATGGTTTTTCCTTCGCAAAAATGTGGTAGCATGCAGCTGGTGGACCTAACCAACAGGCAACCAGACACATCTACAACACCCTCTACAATCAATGCACATCAAGGAGAGTTAGCATGTCTGGCCATCAATCAGCAGGGAACCCAGGTTGCTACAGCTTCTGAGAAGGGAACATTAATCCGTGTGTTTGATACGCAAACCAAGAATATGCTGATAGAATTGCGAAGAGGAGCAGATCCTGCAACATTGTATTGCATTAACTTTAGTCATGATTCAGCGTTTCTGTGTGTGTCCAGCGATAAGGGAACAGTCCATGTATTTGCATTGAAGAATACTTCCTTGAATAAGCGTTCCAGCCTTGCAAAGATGGGATTTCTGGGTCAGTATGTGGAGTCTCAGTGGGGCTTAGCTAACTTCACTGTCCCAGCAGAACGCCCCTGCATCTGCGCCTTTGGATCTGGCAGCTCAGTTGTTGCTGTGTGCGTGGATGGCACCTACCACAAATACGTGTTTACTCCTGATGGCAATTGCAACCGCGAGTCTTATGATGTGTTTCTGGAGTTAGGAGATGACAGTGAATGGATATGGACGAAAAGTCCCCTGCACTTGAACAGCAATGGCCGTGAAGTTAGCATTGGTCTTCGCTGTGGTGATTGGGGTGGCCTCGGCCCTAGTTGCCGCTTTGGTTGTCGTGCTTTGCAAGTGCCTCTGGCTGACAGCCTCTCCAGTGGAGAGGAACCATATATTATTGAAACTCCAGGAGACTTTGGCAAACTTCAGTTCTCCGTTGAATACAACACCGAAGAGAAAGTCATCACGATTGGTCTGGTCCAGGCAAAGGGAATCATTTGCCAAACGAACATACAAACTGCTTTCCTTTATGCCGTAGTTCAGCTTTGCAAGGATGAGAAAATTGTGGATCAGAGGGAAATTGAAAAACAGAAAATGACTTTTGGACCTCAGTGGAACGAAGAATTGTTTTTCTCGAGCGGCGAGAATCCAATTGAAACACTTGCTCTGCGGATTCAGTTGATGGAATTGGACTCGTTTTCAACTTCGCATTTGATTGGTCAAGTGGTGCTTTCGTTGGACGAGGGCGAATTCAATGAGACTCACCCGAAGTGGTACGACATTATGCCTGGCTCGACTGAGGCGTCAAGTCACGAGCATGTTGGCGAGCTGCTTCTCTCCTTAAATTACTTTCCTACTACACAGCGCCTCACAATCGTGATTCTTAAGGCGCGGAACCTGAGAATAGAATCACAGACTGGTTTATGGGGTCCTTCAGTAAAAGTATTCTTGATGTTAAACTCAGCAAGACTTGGCAGGAAGCGAACAGCAATGCAGAAAAAGACTTTAAATCCCGTTTACAACGAAGCATTTACATTCAAAGTTACTTCAGAGACACTTCAAAGAGTTTCTTTCAAAGTGATTGTCGTAAACAAGCATTCGCAAGGTCCTGATGAACAAATTGGCCATGTGCTTCTCGGACAGAATGTGACTGGAAGTGGCATGTCACACTGGAACCACATGCTGACTTCGTTAAGAAAACCCGTCGCCATGTGGCACCTCGTGATTCCTTACACTTGA

Transcript

alor_g14558.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DCV0	WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis OX=8355 GN=wdr45 PE=2 SV=1
Q7ZUX3	WD repeat domain phosphoinositide-interacting protein 4 OS=Danio rerio OX=7955 GN=wdr45 PE=2 SV=1
Q9Y484	WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens OX=9606 GN=WDR45 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21032	PROPPIN	PROPPIN	Repeat	Interproscan
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048720	Family	PROPPIN	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11227	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006497	Biological Process	protein lipidation	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034045	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034497	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044804	Biological Process	nucleophagy	Interproscan
GO:0080025	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan