Genomic Location: Acropora_loripes_156:554785...573833
NR annotation: XP_015769198.1, PREDICTED: LOW QUALITY PROTEIN: phosphoglucomutase-1-like [Acropora digitifera]
Species Acropora loripes · all data for this species · gene families
| CDS |
| alor_g16946.t1 |
| Transcript |
| alor_g16946.t1 |
| Protein |
| alor_g16946.t1 |
| UniProt accession | Description |
|---|---|
| Q4R5E4 | Phosphoglucomutase-1 OS=Macaca fascicularis OX=9541 GN=PGM1 PE=2 SV=3 |
| P36871 | Phosphoglucomutase-1 OS=Homo sapiens OX=9606 GN=PGM1 PE=1 SV=3 |
| Q08DP0 | Phosphoglucomutase-1 OS=Bos taurus OX=9913 GN=PGM1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004871 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03781 all species → | FGE-sulfatase | Sulfatase-modifying factor enzyme 1 | Domain | Interproscan |
| PF02880 all species → | PGM_PMM_III | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | Domain | Interproscan |
| PF02879 all species → | PGM_PMM_II | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | Domain | Interproscan |
| PF02878 all species → | PGM_PMM_I | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | Domain | Interproscan |
| PF00408 all species → | PGM_PMM_IV | Phosphoglucomutase/phosphomannomutase, C-terminal domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR005841 all species → | Family | Alpha-D-phosphohexomutase superfamily | Interproscan |
| IPR036900 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, C-terminal domain superfamily | Interproscan |
| IPR016055 all species → | Homologous_superfamily | Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III | Interproscan |
| IPR016066 all species → | Conserved_site | Alpha-D-phosphohexomutase, conserved site | Interproscan |
| IPR042095 all species → | Homologous_superfamily | Sulfatase-modifying factor enzyme superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR005532 all species → | Domain | Sulfatase-modifying factor enzyme | Interproscan |
| IPR005846 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain III | Interproscan |
| IPR045244 all species → | Family | Phosphoglucomutase | Interproscan |
| IPR005845 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain II | Interproscan |
| IPR005844 all species → | Domain | Alpha-D-phosphohexomutase, alpha/beta/alpha domain I | Interproscan |
| IPR005843 all species → | Domain | Alpha-D-phosphohexomutase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22573 all species → | PHOSPHOHEXOMUTASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0016868 all species → | Molecular Function | intramolecular phosphotransferase activity | Interproscan |
| GO:0071704 all species → | Biological Process | obsolete organic substance metabolic process | Interproscan |
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0004614 all species → | Molecular Function | phosphoglucomutase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
alor_g16946.t1.Genes whose expression across the transcriptome samples of Acropora loripes tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora loripes, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
