Gene detail

Detailed information of alor_g1715.t1 in Acropora loripes

Genomic Location: Acropora_loripes_12:657720...665287
NR annotation: XP_015751336.1, PREDICTED: fibrillin-1-like isoform X5 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q14112	Nidogen-2 OS=Homo sapiens OX=9606 GN=NID2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan