Gene detail

Detailed information of alor_g18124.t1 in Acropora loripes

Genomic Location: Acropora_loripes_41:2334295...2355745
NR annotation: XP_044177005.1, ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g18124.t1

ATGAGTGAGGAGAACAAAAACTTGTATGTTGTGTATTGGAAGGTCACATCAAGCACTGAAGGAAGTGGTCGAGCATCTTCAAATGCCTATAGTAGTTACGGCTCCAGGAGTTGGGGATATGATGGCCTTAGATCAACTAGCTCTTTACCAGGTTTAACAGGACTTGCCAATCTTGGAAATACTTGTTTCATGAACTCGGCTCTGCAATGTTTGAGCAACTCTGTACCACTTACTGAGTACTTTATTTCTGGAAAATATAAAGATGAACTGAATTGTGATAATCCACTTGGAATGAGAGGTGAAATTGCCAAGGCATATGCAAGTCTACTCCATCAGCTCTGGAATGAGAATTACAGCTCAGTTGCTCCAAGACCTTTTAAGATGCAGGTTGGACGGTTTGCACCACAATTTTCTGGTTACCAGCAACAGGATTCTCAAGAACTTCTTGCTTTCTTGTTGGATGGACTTCATGAAGATTTGAATCGTGTAAAGAAGAAGCCTTATGTTGAACTAAAGGATGCGGATGGAAGGCCTGATGATGCTGTTGCCAAAGAATCATGGGAAAACCACCTGCAAAGGAACAACTCTGTTATTGTGGACATATTTCATGGGCTTTTTAAATCCACTCTGGTTTGTCCTGACTGCAATAAGGTCTCCGTGACGTTTGATCCATTCTGCTACCTTTCTCTGCCGCTCCCCGTCAAAAAAGAGAGAATTCTTGATGTTTTTCTTGTACAAAATGACCCTCTTCAGAAACCAACTCTGTATAAATTAACTGTTCCTAAGATGGGGAATATTTCTGACTTGCTTGATGTTTTGTCCAAACTGAGCAGAATTCCAAAGGACAAGATGGTGGTTACAGATGTCTACAATCACAGATTTCACAAAATGTTTACGTTAAGTGAGTCACTGACTCAAATTCTTGACAGAGACGATATATTTGTCTATGAGCTCTTGCACAACAAGTCAGATGACGAAGAAGGTCATTCTATGGTAATTCCAGTTTACCAGAGAGAGATAAGGGCTCGTCTGGCTTCAAGTTATTCAAGTTCTAATAAATCATTATTTGGCCTACCACTAATGGTTTCTGTTCCAAAGAAAAACTTGACTTACAAGGCACTGTACAATATTTTGTTGGAGCGAATGAAACGCTTTGTTAGATTGCCTGAGGAAGAAGTAGAAATGGATTCTGGAAACAAAGAAGCTGATGAGGAAGATATGGACATGAATGACGAAATGAAAGACGAAATAGAAAGTGAAGATTCGAAGGAAACTGTATTGCAAAACAGTGATGAAAATGAAGACGATCAGTTGGATTCAAAAGCTAACAAACTAAACTTGGAACAATGCAGAAAGAAGAGGAAATATTTGTTCAAGTTGACACTTGTAAATTCGTATGGTAGCAATGATGTTCAAGCATTGGAAGACAATTCCAAGCCTCTTAAACTGACCGGACGTTGTTACCTCGCAATCGACTGGGATTCAAAGGTCAAGGAGGAGTACTATGATCATGGATTGGCCGAGGAGTCTGACGAACACGAAAGCGTGAAGAAGAAACCTTCTCAGAAAAAGAGTTGTGTTGGATTAGATGACTGCATTGATCTTTTTTTATCAAGAGAAAAGCTTGGAGCAAATGACCCATGGTATTGTCCATCTTGCAAGAAACACCAACAAGCGACCAAAAAGTTTGACCTGTGGTCTCTTCCCAAAATCCTTGTCGTTCACCTGAAACGATTTTCTTACAACAGTTTTTGGCGGGACAAATTGGATACGTTTGTGAACGTTCCCTTGAGGAAGCTCGATATGTCACAGTATGTGATCAACGAAGATCAGCCGCCACCAATTTATAATTTGATTGCTGTTTCAAATCATTACGGAGGCATGGGAGGAGGGCATTACACGGCTTACGCGAAGAATGTAAAAGATGAAAGGTGGTATTCTTTTGACGACAGTTCCGTGTCTGCCGTTGACGAGTCGCAGATTATCTCCAAGGCAGCTTATGTTCTTTTTTACGAGCGCCAAGAAAGTCAGGTGGAAGAGAGTATGGAGGAGAAAGATGCAGATAATATTGGCCCAGATCAGGATATAGACATGGCGCATGATTGA

Transcript

alor_g18124.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q9R085	Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus OX=10116 GN=Usp15 PE=1 SV=1
Q8R5H1	Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus OX=10090 GN=Usp15 PE=1 SV=1
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14533	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR029346	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan