Detailed information of alor_g19295.t1 in Acropora loripes

Genomic Location: Acropora_loripes_39:2503561...2578797
NR annotation: XP_029198484.2, DNA-directed RNA polymerase, mitochondrial-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O00411DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2
Q8BKF1DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1
O24600DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF14700RPOL_NDNA-directed RNA polymerase N-terminalDomainInterproscan
PF13812PPR_3Pentatricopeptide repeat domainRepeatInterproscan
PF00940RNA_polDNA-dependent RNA polymeraseFamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR029262DomainDNA-directed RNA polymerase, N-terminalInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR037159Homologous_superfamilyDNA-directed RNA polymerase, N-terminal domain superfamilyInterproscan
IPR002092FamilyDNA-directed RNA polymerase, phage-typeInterproscan
IPR002885RepeatPentatricopeptide repeatInterproscan
IPR046950DomainDNA-directed RNA polymerase, C-terminal domain, phage-typeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10102DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001018Molecular Functionmitochondrial promoter sequence-specific DNA bindingInterproscan
GO:0006390Biological Processmitochondrial transcriptionInterproscan
GO:0034245Cellular Componentmitochondrial DNA-directed RNA polymerase complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19719COL2A; collagen type II alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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