Detailed information of alor_g19513.t1 in Acropora loripes

Genomic Location: Acropora_loripes_145:609469...619901
NR annotation: XP_029201439.2, syntaxin-16-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O14662Syntaxin-16 OS=Homo sapiens OX=9606 GN=STX16 PE=1 SV=3
Q8BVI5Syntaxin-16 OS=Mus musculus OX=10090 GN=Stx16 PE=1 SV=3
Q9SUJ1Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04135Nop10pNucleolar RNA-binding protein, Nop10p familyFamilyInterproscan
PF05739SNARESNARE domainFamilyInterproscan
PF00804SyntaxinSyntaxinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007264FamilyH/ACA ribonucleoprotein complex, subunit Nop10Interproscan
IPR036756Homologous_superfamilyH/ACA ribonucleoprotein complex, subunit Nop10 superfamilyInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR006012Conserved_siteSyntaxin/epimorphin, conserved siteInterproscan
IPR045242FamilySyntaxinInterproscan
IPR010989Homologous_superfamilySNAREInterproscan
IPR006011DomainSyntaxin, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19957SYNTAXINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0000149Molecular FunctionSNARE bindingInterproscan
GO:0006906Biological Processvesicle fusionInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0048278Biological Processvesicle dockingInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08489STX16; syntaxin 16-Membrane traffickingko04131deepkoala

TOP