Genomic Location: Acropora_loripes_58:1111335...1136242
NR annotation: XP_029205080.2, histone-lysine N-methyltransferase SETD1A-like isoform X1 [Acropora millepora]
Species Acropora loripes · all data for this species · gene families
| CDS |
| alor_g20092.t1 |
| Transcript |
| alor_g20092.t1 |
| Protein |
| alor_g20092.t1 |
| UniProt accession | Description |
|---|---|
| Q1LY77 | Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio OX=7955 GN=setd1ba PE=1 SV=2 |
| Q8CFT2 | Histone-lysine N-methyltransferase SETD1B OS=Mus musculus OX=10090 GN=Setd1b PE=1 SV=2 |
| Q5F3P8 | Histone-lysine N-methyltransferase SETD1B OS=Gallus gallus OX=9031 GN=SETD1B PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004215 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01923 all species → | Cob_adeno_trans | Cobalamin adenosyltransferase | Domain | Interproscan |
| PF11764 all species → | N-SET | COMPASS (Complex proteins associated with Set1p) component N | Domain | Interproscan |
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00856 all species → | SET | SET domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016030 all species → | Domain | Cobalamin adenosyltransferase-like | Interproscan |
| IPR036451 all species → | Homologous_superfamily | Cobalamin adenosyltransferase-like superfamily | Interproscan |
| IPR044570 all species → | Family | Histone-lysine N-methyltransferase Set1-like | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR024657 all species → | Domain | COMPASS complex Set1 subunit, N-SET domain | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR029499 all species → | Family | Corrinoid adenosyltransferase, PduO-type | Interproscan |
| IPR037841 all species → | Domain | Histone-lysine N-methyltransferase SETD1A/B-like, SET domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45814 all species → | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0042800 all species → | Molecular Function | histone H3K4 methyltransferase activity | Interproscan |
| GO:0048188 all species → | Cellular Component | Set1C/COMPASS complex | Interproscan |
| GO:0051568 all species → | Biological Process | obsolete histone H3-K4 methylation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
alor_g20092.t1.Genes whose expression across the transcriptome samples of Acropora loripes tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora loripes, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
