Gene detail

Detailed information of alor_g20120.t1 in Acropora loripes

Genomic Location: Acropora_loripes_58:1518761...1539415
NR annotation: XP_029189720.2, uncharacterized protein LOC114956699 isoform X2 [Acropora millepora]
Species abbreviation ALORI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alor_g20120.t1

ATGCAGCAAGAGGGACGCACGGACTGTGTTGAACCGAGGAATTTTGAAAAATTTGTAGCTGTGTGGGATTTTGTGCCATCGAAAAAAGACGAATTGGCGCTAGTGAAGGGAGAAGCTGTGCTTGTGGTAAAGAAATACAAAGACGGATGGTACAGGGGTATTAGATGTAGGGGATATCAGGTTGGATGCTTTCCTGGGAATTTTGTAGCAAAAGATTCAGATCAAACTGATACTATTGAATGGCAGGACACGCAGCAAGATCCCCTTTCATCGTCTCCAACATCAGAAGTTAACACGTTAGCCGAGTTATCACAGGAACACAAAGATCTGTCATCTGAGGAAAATGGAATGGATGATCACAACAGCATGGAAAATGGACAGCCAGATGCAGATGGAACTAAAATGGAGAGACATGATTCACTGAGCAGTAACAACAGTGGTAACTTAAGCCCTGTGCCATTTACCTCATTTCATGGACTGAACATTATTGCGGATGCAATGGGACAAGGTGAAGAATCAGAAGAAAGGAAAAGAACTAAAGCCGCAATGGAACTCCTGACATCAGAGGTTTCATATTTCAATGGATTAAACCTTCTCTCTGGGCATTACATTCGGCCACTCAGAAAGCTTCGTATCATCTCGCGGGAAGATGTGGAAAAAATATTTTCAAATGCAGAGACCCTAGAGATCATAAGCAAAGGATTAGTGGCTAAACTTCAAGCCCGACTGGCTCACTGGGATGTCAACTCAACACAGATTGGAGATGTGCTTGTAGAAGTGGTAGGAATTAATATTTATGCTATCAGTAGCAGTGATAGATCTCTGAAGTCAAAGTTAGAGAAAACCAATGAGAAGTTCAGAAATTTCTTGTCAAAGCTAGTGGAAATACACTCATTAGTAACTGCATATTGCTATGTTCTAACCCAGGTCAATTGTAGCCAGACTCTGGATTCTTTGTTGCTAATGCCAATACAGAGGGTTCCTAGATATGAACTTATTCTCAAGGAATTGGTCAAACGCACGAGCAAGAATCACCCAGATTATGAAAACTTGAAAGAAGCACAAAGTAAAGCTCAAAAGGCAGCAGAAGCTTTGAATGAACATCTCAGGCAGATAGAGAATGAGACAAAAGTTGTGGAAGTCATTAAGAGTTTTCCAAATGATGAATTGAACCTGATTCGACGTGCTGCAACCATCAGTCCAGGAAGGCAATTATTTGGATCTGTTCGTCTGAGGAAGCATGATAGAGACCACATGACCACCTTATCAAAGAGTCTTAAAAGGATATCTCTTCCTTTGATGGACACCATCGACACCTCTAGTGTTTCTCGCCGCGGCTCCTCTGCAACAGTTACACACAATACTCTACCTCGTAGTGCAGATAACAGTGACAGTGACAGTGAAACAGAAAGTTCCCAATCAGGAGACATTTTAGTAACCAGTACATACATCTACGAGGGTGTTGTGGAGCGGGTCACAAAAAAATGCAGTGGATCAAGTGAGGGTGGAATGGGACATGAAACAGTTGAAAGGCATCTTTTCTTGTTTAACAATGTTTTGTTAGTTGCTTTGCCATCAGAAAGTCTCATAACAGGAAAGAAAACTTATAAACTTAAAAATCATATCTCTCTTGCACAAGCATGGCTCACTTCACCCAGTGCATATTGCAACAATTCACCGGACAATATGTTTCTTCTTGGATCACCCACTCAGATTTACAAATTCTTAGCATCATCAGAATCAGCAAAAAACACTTGGGTTAAAAAGCTTAAAACATGCATTGATAAAGAAAAAGAGGCATTTGTCAAGTCATTCAAAGGGTTGCCGGTACCTGATGCAGAGTTTTTAGCAGTATCTTCAGAAGTTAAAACAGACTACAACAAGACCGTTGACCTAGAGTTAAATCTGAAGCAAGGTGAAGAGATCCTGATTATTGGCATCAAATCCGGAGGTTCATGGCTTCCAGGACTGTATTCTACAAGTGTTTTTGAGTTTGAGTTAGCTTGGTGGCCAGGACTTAACAAAGGCAGATTTGGTTGGTTTCCTGCTCAATGTGTTACAGGGCCTGATGTGACAAGTCTAAGCTCTGCTAATGAGTTTCACCCGATTCCAGTTGCCGTGGCTCTTAATGGCATAAAGAAAACAATGATGAGTTGGACAGGGAGCCAACTATCTGCGCCTGACATCGAAGATATGACTACGCTAAAAGTCTTCAAACCTGACAAAACATTTAAGACCTGCAAAGTGGAGCCACATTACTTGGTTTCTGATGTGTTACAGCAATATACGAAACACAAGAGTTTTGTTGGTGGACAGGTTGACACTGAAGCAATAGAAATGCGAGAAGAATCATTAGATGGTTCTGTTCAAAGGAGTTTGGACCCACAGGAGAAGTTGCAAGATATTTTTGCTTTGTGGGGAAAGTATCAGGGGAAAATGAAGTTTGTCATGCATAATGTTAGTGAAAAATCAAGGAAGCAATCAGGAATAGAAAGAGAAAGAAAACCAGAGCCCCCAACTGGATTACTCATCTCCTTTGATTGA

Transcript

alor_g20120.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q553D3	Rac guanine nucleotide exchange factor JJ OS=Dictyostelium discoideum OX=44689 GN=gxcJJ PE=1 SV=1
Q1ZXH8	Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum OX=44689 GN=gxcDD PE=4 SV=3
O88387	FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Fgd4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007354 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alor_g20120.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.