Gene detail

Detailed information of alor_g21091.t2 in Acropora loripes

Genomic Location: Acropora_loripes_61:3103108...3118139
NR annotation: XP_044165599.1, lysine-specific histone demethylase 1B-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g21091.t2

ATGGACTCCAGTCTGACCAAGTGGCGTTCCCCAAGGACTGTCAAACGGAAGCAGTTTTTTGATGATGAGAATTTGTCATATGTCAGTGAAGAACGCTTCAGAGCTTGTGAAAAAGCTGGTTGCCCAGCGAAGAAACCAACATGTTGTGCAAGATTTGATGAAACGACAGTAGGTCCAGAAAGAGTGGAAACAAGCTTAATACAAAGTCGCTTTATCAAGCTGTTTCTAATAAGATGTGCTGGGGCAGGCTACACTTCAAGGTGGTATCACATGTCTGATGGAGAGCATTTTTGTAATGCTTGTTTTGATTACATGTACCGCAGTTGTAAAGATGGGTACGAAACCTATACAAAGTGGAAATACGACTGGAGTGCAAGTGGGCAGAGAGAAGCCAACATCAAGTTAAAACCAAAACTAAGGTTAAAAGGAAAGCAGTCGTCCCCTGTAGTGTTGAGGAGGATGAGGGTTTCTGCAGTTAACTGTGCTGGTTGGTTGGAAAGCCTGACAGAACCACCGCTTCTACAAAGTTGCCCAGCTGCTCCATTTCTCGCATCTTATTTTCCTGATGGTGTTGGTTTAAGCCCTACAATCAATAATTGGAAACAAAATGATGCCACTTCTACAGGGTATGTGAATCTTTTTCATCACCCTGATGACACCCAGACAGCTTTAACCTTCCGTCCTGACATTATGGAGAAAGACGAGATAGAAACATTTCCAGAATTTACAAGTGTCAGTTGTGCGGTTTCAGTTATTGTCATTGGTGCTGGAGCTGCTGGCTTGTCAGCTGCAAGGCATCTGGAGAACTTTGGTGTACAGGTGATAGTTGTTGAAAGCCGAGATAGGATTGGTGGGCGTGTCTGGGATGACAAGAAAATGTTTGGTTGCTGTGTTGGTAGAGGTGCTCAGATTCTCAATGGATGTACAAACAATCCAATCTCTGTTTTGTGTGAACAGTCTGGTCTTACTATGCACCACATCGGTAGCAAATGTGACCTTCTCATGGAAGATGGCAAGTGTGTTGACAGCAGCATTGACAGTAAAGTTGAATTTCACTTTAATGCTCTACTTGATGCTATTGCTGATCAGAAGAGAGATTCCCCCAACAATGACAAATCCTTGGAAGCTATTTTCGTGCTTGCAATATTTGATTACGATAACGAATCCGATGCCGGCGGACGCGACCTGGAAGACAAATTGCTGCAGTTTCATCTGGGAAACCTTGAGTTCAGCTGTGCTGCTCCTCTTAGTAAAGTATCATCCGTTTCCTGGGACCAAAATGAAGAATTTCCGCAGTTTTCGGGTGATCACACTCTTCTACACAATGGCTTTGGCATCTTACTTAGTAACCTCGCTCAGAACTTGGATATAAGGCTGCAATTTAAAGTAAAAGAAGTTGATTACTCTGGAGACAAAGTTGTTTTGACGAGTGCCGATGGGAGGATACTCTCTGCTGACAAGGTAATTGTTACTGTGCCTCTATTTGTCTTAAAATCTGACTGGTTAAGATTTATCCCTGATCTCCCTACAAGGAAACAGACTGCAATAAAAAATCTTGGAGCTGGACTCATAGAAAAGGTTGTTTTAAAGTTCAAGTACAATTTTTGGGAGAAAGTGGTAAAAGATGCAGACTTCTTCGGTCATGTTCCAGAGTCTCGTGAAGGGAGAGGTAGCTGTGGTCTTTTCTATGATCTGAGCGGAAAGAGGCATGGACATACCAATAAGGCTGGTAATGTCCTTATGACTGTTTTAACTGGAGAAGCGGCTGCGCATGCTCAGGAGATGACAGATAAAGCGGTGGTGGATATGTGCATGGCCATCTTGCAGAAACTTTTCCCTTTTAAGATTCCAGATCCACAAGGTTACTTGGTGACGCACTGGGGTGGAGATCCATACTCTGGAATGGCGTATTCTTATATTCCTGTTGGATCGACTGGAGAGGAATATGATCATCTAGCGTGTGATGTTGATAACAAAGTGTTTTTCGCTGGAGAGGCAACCAATCGCTACTTTCCGCAAACAGTCACCGGTGCTTACTTGAGTGGTATCAGAGAAGCTGCAAAGATTGTATCATTGACAGAAACAAGCATGACTTCATGA

Transcript

alor_g21091.t2

Protein

Uniprot

Uniprot term	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002937	Domain	Amine oxidase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala