Gene detail

Detailed information of alor_g21616.t2 in Acropora loripes

Genomic Location: Acropora_loripes_181:537956...555796
NR annotation: CAH3018483.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g21616.t2

ATGGCTGGAGACGGAGCTATAGATATCGATTTATACGCTACGGTAGACGAATTCGAGCCTGAGGTCGCTGGCCAGCATCACATGACCGAAGGATTGGATCTTTATGACGATGTTCTGACAACGGGAGGCGAGATGCCCGTGGAACCTGAAGATGAAGAATCACAGACACAGTATGAAGAAGATGCTCCTGGTGAAATTCTAACAGAAGAGGCACAGTCAGGGGCGTACGAGTATAAGTCATACACAACAGTCCATCCAAAATCAGCTGCTGCCCGCTCCTCCAACACTTACTATGAACGGAACAAAGGAAAACCACTTTACGTTGGCAATCTGACGTGGTGGACAAATGATCAGGAGCTGACAGAAGCGCTTCAAGAATGCGGCGTCACTGATCTCATTAATATCAAATTCTTTGAAAACAGAACCAATGGCCAATCCAAAGGATTTGCAATGATTGAGCTCGGTTCTGAGACGTCTGTTCAACTTGTTACTGAAAAGCTACCAAAAATGGAGATTCATTCACAATTACCAATGGTTACACCAGCCACCAAACAATACTTACAGCAGTTTGAAGCACAGTCAAGAAAAAATAATCCCAGCACCAGTGGTTCACAAGCAGAGCAAGAACCCCCACCATACCAACAAGGGGGAGGAAGAGGGTTTGGGTACAATAGGGGTGGATTCAGAGGTCGAGGGTTTCCTATCCGTCCAGGGATGGGACAAGGGTTTGAGCATAGACCCCCACCCCCTGGTGATATGGGCCGTGGAGCACCTTGGATGGGTCATGGACACATGGGAATGCCAAGGCACCCTCCACCCGGTATGCCGCCCTATCACATGGAGCATCCTCCGCCATTCTACCCGATGGTACCACCGCCTACTGCAGACAAGATGCCCGGACCAATGCAGCAACAACTCCATGTGCCACCGCCGCCTCCACCAGGAGCTTCTTCCTTACAAGATCATCGTCCGCCAGGCATGGTTCCACAGTTTCCGAAGCCTCCCGTTGCTCCACATGTCAACCCAGCATTTTTTCCCGAGGGACCACCGCCAGAAACCTTCCTTGCGGCTGGAGCTGCTTCGGGTGTCAACAGAGTGGATGTGATGTCACAGTTCCTTCCCAGGCAAGGGGACGATTACAACGAGTCAATGAAGAGAAACCAAGTGCTTGCCAGCACCGCTATCAAAAGAGCAATGTCAGACGCCAACTCGGGTGATTATGAAAGCGGCATAGAAACGCTAGTTGCAGCAATATCACTCATCAAACAGTCGCCGACAGCTTCTGAGGAGCGCTGCCAGGTACTTGTGCAGTCTTTACAAGATTGTTATCAAGGACTGGAGATTCAGCTGCTAGAAAGAAGATCGACAGGAAGCAAACATCATTACAGCGACAAAGACGATTTTGAAAGTGAAAGCAAGGAGAAACGGCACCGGCGCAAACGCTCACGGTCTAGATCACGTGACAGGGATAGGAGATCAAGGTCCCGTGATAAGCGCTCGAGGTCACCGTGCGTCGAAAATCTTGCCAAAAGACTCAATCCAAACGAAACTCTTGTTTGTCCCGTATGCCAGACGGATGCGAAAATCTCTCGGGACGAGGTCAACACTTTACCTATCAATTTTTTTCTGGATAACATGTTGGATATTGCTCTCATCAACTCGAGCGACCATGAACCAGTGCCTTGTTCGAGCTGCGACGCTGGGAACCCAGCGACGTCCAGATGCGTTGACTGTGGGGAATTCCTTTGCGAAAGATGCTACGGTGTTCACAAGAGGATTCGTCAAACCAAAGACCACAGGATACTGACCATATCTGAACTCCTTGAGAGCAACACGGGAGAGGATTTGCATAGGCCGGCGTTTTGTGCGATCCACCGAAGCGAGCAGTTAAAGTACTATTGTGAAACATGCAATGAAGCAGTTTGTAGAGACTGCGTTTTGATTGAGCATCGCCAGCACAAGTACAACTACATAAAAGACTGCAAAAAGATTCAAAAACAGAGAGCGGCTTTAGAAAACCTCTACGAGCAATGCGCGGGCAATGTTACACTGCTCGAAAAATCCATTCGAGAGATTCAAGGGATTTCGGATACGCTGCACGGAAGACTGATCTCTGTGAAAGCGGAAATTCGGGAAACGGCCCTTCAGCAGATAAAAGTTATAAAAGAAAGGGAACGAGAGCTGTTGATCAAAGTGGAGAGGATCCACAGGGCGAAATCTGTAATTTTACGGCGGCAAAAAGAACAACTAGAGAATGATTTTACAAGGTTTAGAACAGGTTGCGATTTCTCCGAACAGGTTTTGAGGTACGCTAACGAGGTAGAGTTGCTGTCACTTAGAGCGCACATCACAAATCGATTAACAGAATTGAATGAAACCGAGCTCGAGTGTAAACCACAAGAAAACGCTGAGCTGAAATATGAAGTAAACAGTAAGGAAGCTGAAAGCGCTGTTTCGCACAGTTTAGGTCTTTTGAAAAGTAGCGGGCCACATCTAACGCTGGACGACTCTGCGCTGCCATTAACGAACGGTAATGAAAACACTGAAAGTGCTGAAATCTCCTTGAGGGAAGCACCGATTTCCGTTGAGCTGCGAGACACCACAGGAGCCCTTCTCGCCCCTGAAACAATTCATCAAGCGGACGGCCAGTCCTTCACAGGTTATCACCCGTACTTCAATGGCATCTTCTCGTTTACTGTTTTTGTGCGCGGGCAGACGGTGGAAGGATTTCCACTGGACATAAACATCGCGGACATTGCGCCTCGAGTAAGAAGCGCAAGGAAAGCCATTGAAGGGAGTGGGTCCAAGTTTGGCAAATTGGGGGATCCCCACGGGGTAGCAGTGGATCAAGATGGCAACGTCATTGTTAGTGACTCACGTAATCATCGTCTCCAGGTGTTTGATACGGATGGCAATTTCCGCTTCCGGTTTGGCTCACCCGGAAGCGCCGATGGTCACTTTCAGTCTCCGAGTGGAGTAGCAGTGACCAGGGATGGAGATATTGTTGTTGCGGACACTATGAACAATAGAATTCAGATATTTACAAAGGAAGGCAAGTTCATCAAAAAGATTGACAAGGGATCCATGCAAAATGAACGCCTCCACCAGCCGTACGCTGTGGCCGTTGACAACGGCGGGCGTCTTTTTGTCGTCGACCGTGGAAATTCGCGCGTTTTGGTCCTAAATCAGGAAGACCAGGTAATCCTAGCATTTGGCTCCCTTGGTGACGGTAGAGGACAATTCAACTGTCCCACTGGCATCGCAGTAAGTAGTAAAGGTCACGTGATTATTACCGACTTCGGAAACGATCGGGTGCAGGTGTTCAGCTCAACGGGTCAGTTTCTATTCCACTTCGGAAGGAGCGGAAGAGCCGACGGAGAGTTCAACTGGCCAACTGGTGTTGCTACCGACGCTGACGACCGCATCATTGTGAGCGACTCTTATAATCATCGGATTCAGGTCTTTAACGAAGACGGGTCGTTCGTCACTCGGTTTGGAACCGAAGGAAACAACAGAGGACAGTTTAAAAGGCCCGAGGGTGTCGCTGTGACTTCCCAGGGAAATATTGTTATTGCTGACTGGGGAAATGACAGGATCCAGGTCTTTTAA

Transcript

alor_g21616.t2

Protein

Uniprot

Uniprot term	Description
E7FAM5	E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q5ZL34	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034772	Family	CPSF6/7 family	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12035	TRIM71; tripartite motif-containing protein 71	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala