Gene detail

Detailed information of alor_g22888.t1 in Acropora loripes

Genomic Location: Acropora_loripes_11:3284076...3297222
NR annotation: XP_044184289.1, KRR1 small subunit processome component homolog [Acropora millepora]
Species abbreviation ALORI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7L9	KRR1 small subunit processome component homolog OS=Bos taurus OX=9913 GN=KRR1 PE=2 SV=2
Q8BGA5	KRR1 small subunit processome component homolog OS=Mus musculus OX=10090 GN=Krr1 PE=2 SV=1
B4G9L6	KRR1 small subunit processome component homolog OS=Drosophila persimilis OX=7234 GN=dbe PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005426 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21800 all species →	KRR1-like_KH2	KRR1 small subunit processome component, second KH domain	Domain	Interproscan
PF17903 all species →	KH_8	Krr1 KH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR048548 all species →	Domain	KRR1 small subunit processome component, second KH domain	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR048549 all species →	Domain	KRR1 small subunit processome component, second KH domain, eukaryotes	Interproscan
IPR041174 all species →	Domain	KRR1 small subunit processome component, first KH domain	Interproscan
IPR024166 all species →	Family	Ribosomal RNA assembly KRR1	Interproscan
IPR048550 all species →	Domain	KRR1 small subunit processome component, first KH domain, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12581 all species →	HIV-1 REV BINDING PROTEIN 2, 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06961	KRR1; ribosomal RNA assembly protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.