Gene detail

Detailed information of alor_g23482.t1 in Acropora loripes

Genomic Location: Acropora_loripes_4:2119827...2121988
NR annotation: XP_044177789.1, protein lin-28-like isoform X2 [Acropora millepora]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
O65639	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1
Q94C69	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1
P27484	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18754	LIN28; protein lin-28	-	Messenger RNA biogenesis	ko03019	deepkoala