Detailed information of alor_g24792.t1 in Acropora loripes

Genomic Location: Acropora_loripes_2:7485001...7495504
NR annotation: XP_029193221.1, regulator of nonsense transcripts 1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q92900Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
F1RCY6Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
Q9EPU0Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13086AAA_11AAA domainDomainInterproscan
PF04851ResIIIType III restriction enzyme, res subunitFamilyInterproscan
PF18141UPF1_1B_domRNA helicase UPF1, 1B domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR006935DomainHelicase/UvrB, N-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR040812DomainRNA helicase UPF1, 1B domainInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

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