Gene detail

Detailed information of alor_g24794.t1 in Acropora loripes

Genomic Location: Acropora_loripes_2:7502671...7504912
NR annotation: XP_029193221.1, regulator of nonsense transcripts 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q98TR3	Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes OX=31033 GN=rent1 PE=3 SV=1
F1RCY6	Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
Q9EPU0	Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09416	UPF1_Zn_bind	RNA helicase (UPF2 interacting domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018999	Domain	RNA helicase UPF1, Cys/His rich zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan