Detailed information of alor_g25483.t1 in Acropora loripes

Genomic Location: Acropora_loripes_134:79347...96711
NR annotation: XP_044180313.1, F-box/LRR-repeat protein 18-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5R7X2U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii OX=9601 GN=U2SURP PE=2 SV=1
O15042U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2
Q6NV83U2 snRNP-associated SURP motif-containing protein OS=Mus musculus OX=10090 GN=U2surp PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19729FBXL18_LRRF-box/LRR-repeat protein 18, LRRRepeatInterproscan
PF12937F-box-likeF-box-likeDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001810DomainF-box domainInterproscan
IPR045627DomainF-box/LRR-repeat protein 18, LRR domainInterproscan
IPR036047Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR051485FamilySR-related and CTD-associated factorInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035009DomainSR140, RNA recognition motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23140RNA PROCESSING PROTEIN LD23810PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

TOP