Gene detail

Detailed information of alor_g25754.t1 in Acropora loripes

Genomic Location: Acropora_loripes_35:1113981...1142163
NR annotation: XP_044173866.1, LOW QUALITY PROTEIN: coiled-coil and C2 domain-containing protein 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g25754.t1

ATGTTTGGCCGAAAAAAGAAACCGTCCCGTCCTCAAGAAGGACAGAAGAAAAACGATCTCTCTGCCATGCTTGGAATTGACATCAGCGCAGAAGATATGGCTGAATTGGGTATCGGTTGCATTGGAGTCAGCAATGGTGACGAGGACGATGAGGATGATGATGAAAGCCTGGAAGCTGAGCTAGCAGCTCTTCAGGGAGAATCTCGTCCAAAGGAGAAGAGAAAAAAAACCGCTGGAAGAATTGATGCAGTTCTCTTGGGAGATGAAGACATGGAAAATGATGAAGAAGATGATGAAGATCTTGAAAACAATCCCGAGCTGTTGGCAGAGCTTCAATGCATTGCTCCAGGAGATGATGGCATAGAACATCGAGATCCAACACCAGTCATGGTTCCAACCGTCCAAGCACTGCCAAACGCTCAACAGGATGGCAAGGGCACTTCAGCTGATTTGAATGTTTTGCTAGAAAGGGAGGGTATGTATAAGCAAGCACTAGATAATGCTAGCAAGGCTGGAGAGGGGAACAAGGCACGGCGATATGGCAGAGGGCTCAAGGAAATAGAGCAAATGATTAAGGATGCCAAAGCTGGTAAAACAGTTGACATGGATGTTATGCCACCTCCATTAGCTGTAAAAGCTCCAGCTCCTTCTCCACCAGTCACAACTCAAGCTATCACTGAAAGGGAGAATCAGGGATCTACACAGACCAACAAGGCAACAAATGCAGATCATGACACTGCACTAGCATCCAACCTAGCAAATAAGGAATTATCTGAGTCACAGATTCCTTCATCTGAAAAAGCCAAAAGTGTGGATTTATTTACCACAAGAAGGAATGAGTACAGAATAGCTGCCTTGACTTGCAAGAAACAAGGAGAAATCCAGCAAGCTAAACAGTTTCTTGCAATTTCCAAGCAAATAGACTCAGCGATTGAGCGGCTGAAAAGCAATGAAGAAGTGGATGTCTCCCAATTACCACCTGTACCAACATTACCTGCACCCGCAACGGGTGAAATTTCAACTTCAACAGAGCGGCAGTCAACTGCTGCTCCCGCTGAACCACAGCAGAGTACTTCATCAGGGGATGGGTCGGGCGGGGAAAGCAGTGCGCCAAAGAACTTAGAACCACCCCCACCCCCCAAGGACGTTGCGGAAGCGTTGCAACAAAGACTGGCTAAGTATCAGAGCGGAATGGACGAAGCGAAAAAGGATGGCAACTCAGGCAAGGCGCGGAGAATGGGGCGAATTGTGAAACAATATCAAGATGCTATTAAAAACCACAAAGCAGGAAAACCTGTGGCATTCGGCGACCTACCCACCCCTCCAGGGTATGCTCCCATCCCGGGTATGGCTTCTCGTGACGATGAAGCAGATGATAGCGCTCAAACTGAAACTCAATTTTCGGGCACAAGCCAAACAACAGTCCCCCAAGTACCTACCACCTCTCAAGTTTCTGGACCGGCCGGTGCGGCCGCGGCGAGTGCTCCGAGTCGACCTACTGCTCCGCCCTCAGCGTCGATGAGAAAGTCACCAAATCGGAATGAGCAACAACTAAAATATCTGCTGGAACGCCAAAAGGAATTCAAGATGGCCGCCGTGCAGTCCAAGAAGCGGGGAGACCTGGAAGGAGCTAAGAACTATCTGCGCATGAGCAAGGTACCACCGTCGCCGTTCGCAGCTGCTAGCCCAGCGCCCTCCAGTGAAATGGACTTTGAAATGGTACAAGCAGAAGATTGCGATCCAAACCCACCTACACCTGAGGAAATATCCGAGCTGTTCTCAAGACTGGAGGACGCACTCATTAAACAAATTGAGATGTGTGCAAGAAATGCTCATCATTACCAAAAGCTAGGAGACATAACAAATACCAAAAATTTTGAGATGATGTCCAAGAATTTACGCCAGGATCTGGATGCCGTTAAGAGCGCCCGCAAACACCAGGATCCACCACCAAGATTCCATTATGAGGACAGATCCTTCACGATTGTGGACTCATTTCCAGATCTAAGTGATTCAGAAGTAGAAATCACCATAATAAGAGGGCTCAATATTCCTCTTCCCTCAGGTTACCAACCCAAGGACATGTTCACCTACGTATCTTACGAATTTCCTTTTCCCAGTACTGAAGAGCCGCAGACAGGCCGAACGCAAACAGCAAAGCATTCAATTAACCCAGACTATAATGAAGTTTTCAAAGTGAACATAGATAGGAAAAATCGATCGTTAGGACGCATTTTCAAGAGGCAACCGTGTAAATTGGAGGTAAAATATGAAAGGGGTTTCCTAAAAGCAGACAAATCTTTAGGTCAAGTGCCAATTAAACTGAGTGCATTTGACAACAAGTGTGAGATCCACGAATGTTTTGATCTGATGGACACGGATCGCGGGCGTAAAGCTGTTGGCGGAAAACTCGAAGTTCGTCTGAGAATCCGTGAGCCGCTTGTCGACAAAGATGTCAAAATTGAGAAATGGAAGTGGCTGGTCATCGATCTTCATCTCACTTCTAGAAAGATGGCAGCATTACCAAGGGAATCGTCTAAAGTCTCGCCAAAGCCTGGAAAAGTTTCCAAAGGACCCGAATCTGCTGAAAAGCCGTCTGTCAGCTTAGAAGTCTTGAAGCTTGAAAAGCAAATTGCTGAAAAACAGTTGACTGCTCAAAAATCCAGGGGTGAATTGCCTTCCCCAGCAATGATTCAGCGGTATAAACAATGCCAGCAGAAGATAGCTGAGGTGGAAACAATGCTGGCGAGTGGTAACAGAAACGTGCTAATTAATTATATCCGAAAACTGCAAGAAAACGTCCCACAAGAGCACGCAAAAGCACAACAGGCATTAAAAGCCGGCAACAAAAGTGAAGCCCAATTGTGCTTGACAAGAAGAAAGTTAATGGAAAACGAGATTTCAAGCCTGAAAAGACAACTTGGCATCCGAGGAACTCATGACCTTATAGAAGGGGTAAAAGCCAAAATTCATGTAGACCATGGAGCTAGTTCCATTTTCCACAAAGCAAGACTGGCGTTATATGCTCTCAGGGAGAAAATTGAACAGGATCTGGAGGGACTCGAAAATCCAGGGGCTATTGAACCTGTCCAATATTCTGACTGGGCCACACCTATAGTCCCAGTTACGATAAGTGATCACGAGACTGCACGACTCTGCGGAGACTATAAGCTTGCAACAAATGGCCACAACTAG

Transcript

alor_g25754.t1

Protein

Uniprot

Uniprot term	Description
Q9VKJ9	Coiled-coil and C2 domain-containing protein 1-like OS=Drosophila melanogaster OX=7227 GN=l(2)gd1 PE=1 SV=1
Q29M42	Coiled-coil and C2 domain-containing protein 1-like OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA18377 PE=3 SV=2
Q6PF54	Coiled-coil and C2 domain-containing protein 1B OS=Xenopus laevis OX=8355 GN=cc2d1b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF21528	CC2D1A-B_DM14	Coiled-coil and C2 domain-containing protein 1, DM14 domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR037772	Domain	Freud, C2 domain	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR039725	Family	Coiled-coil and C2 domain-containing protein 1	Interproscan
IPR006608	Domain	Coiled-coil and C2 domain-containing protein 1, DM14 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13076	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001227	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18260	CC2D1; coiled-coil and C2 domain-containing protein 1	-	Exosome	ko04147	deepkoala