Gene detail

Detailed information of alor_g2598.t1 in Acropora loripes

Genomic Location: Acropora_loripes_132:451812...483353
NR annotation: XP_015757883.1, PREDICTED: DNA repair protein RAD50-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

alor_g2598.t1

ATGATTTCTTTCCTCGGAGTATCAAAGGCAGTGTTGGACAATGTTATTTTCTGTCATCAAGAAGAGTCTAACTGGCCACTTAGTGAGGGCAAAGTTTTAAAACAAAAATTTGACGACATCTTTGCAGCAACAAGGTACATCAAAGCTCTGGAAGCAATTCGAAAATTTAGACAAGAGCAGGCTCAGAGTGTAAAGGAGTATGCCATCGAGTTGAACCATCTTAAAGCAAACAAGGAGAAGGCAGAACAGATAACAGATGAACTTACCGAAATCCAGAGAAAGGTCTCTACAACAAAGGATAGAATCAAGGAACTGAATGAAGAGCTTGAACCAGTTCAGCTGAAGTTAACCAACCTTGACAGCATCGCTAATGGTGTGGATCAGTTGGAGAGAAAACTTGGCCATCTTTGGCAACGTTACACCTTTCCCTTAGATGAAGGCAGACTCCAGAGGCTTGGTCAAGAGCAGCAAAGTTTGAGCGCTAAAGAGATTGAACTTCACGTGGAAGGAGGAAGACTTCAGAGGGAAGCTCACAAGCACAAAGTGAACGTCAGTGATAGAGACAAAGCTATTGTGGATCTGGCAAATGAGTATAACTTTAAAGGCTTTGAGAAAGGCCCCTTCTCAAACGATAGTGACGCGGTTCAGTTCCTGGAAGAAATGAGGCGGAAATATGAAAATGTGAAACATGACACGAGGCATCAAAGGGGAGAGAATCAGCGGAAGTTGAAGCAGATTGGTCAGGAATTGAGTAGGATTAACACTTCAGCAAACAGGCTTAAATCACTCAAGGGCGAGCTTCAGAGGGCGGAAGAAGCGCTTGGTGATGCAAAAGAAGGTGGTAATTTAGATGTGTTAGGAAGGGAGATTGATCAACTTCAGTCTGAGAAACGTAAAATCGAAAACGAGCTGCGCCAGTTAAGGGAGGAACAGCAAGCGATGCACATGCAATCCAAGACACAAGCTGAATTGGACATGAAGACAAAAGAGAAGAGGACCAAAGAGAACGCCATTCAGCAAATGGAAGACTTGAATGACAAAGAGAATCTTGTGCAGGAGCGCAGACGACAAATAACTGAGGCGTGTGACGGGAATGATTATAACACCACAAGAGAACTTATTAAGAACAAAATTGACTCTCTTCAGGATAAACGTGGTACCATTGCTTCGTTGGAGAAAATCTATTCGAAGTATGTGTCAAAGCTGGAGAGTAGTGAGGTTCACAGGAGCGGATGCCCTCTGTGCCACAGGACATTCAATAGCAACAATGAAATTGCTGAACTTGTTTCTGAGCTGAAGAACAAAATTCAAAATCTCCCTGATCGAAGAGAGGCAAACGAAGGAAGTCTCAAGAAAGAGCAAAAACGCTACGATCACATCCTTCAACTTGCTCCAGCAAAAGAAACGCTGGAATCTTTGGTAAAGAATGAAATTCCTGACGCTAAGTCCAAGTTGGACGCTATAAACTCTGAAGAACAAACTATCAAAAATCGTATAACCGAGCTGGAAGATCTCCTGAACATTACTGAAAAGGAGGAGCAAAATGTAAGGCAAATGGAGCCAGATATTCGTATGCTAGCCAAGCATAAAGGAGAGCTCAGGGAACTTGACAGAAACATCTCTCTACTGCAATCCAAAATGAACGGAGTCGCCCGTGGCCGCTCAATGCAGTCAGTATCCAGCGAGATTACTGAGAAACAAGACAAATCTGAATTTTTGAATACCAGTATTGATCGCAAGCGCACACAGTTGAACCGACTTCAACAGGAACTCAATAAACTGGAGACCAATGTGCATGAGCTTAAGTTACAGAAGCTCGGTTTGGAAGCTCAGCTACAAACAAGAACGCATTTGGAGCAACAGAAATCTGAACTCACTGCTAATAACGTTGCGTTTGAAAGAGAGATTAAGGCTGGACTTGAAGAGTTTCAGGATCAAAAAGTGACTGTGACGAGAGATAAAGAAAAAGCAGATCATGAGAACAAGAAGTTGCTCGATAGAATTCGAACAAGTAGGGATGAAGTGCGTATGAGAACTGACGCAATAAATAGGTATGTGACTCTAGGAGGTGACGCGGCTCTGGAAGACAACAAAGCTGGCCTACGCGAGCTGGCAGACCGAACAGATAAACTTAAAAGGGAGAAAGACGTCATTTCGAATAAAATCGATAAACTGAAGGAAGACATCGCTAATCAGCAGATCAGTGCACGCGAACTGGAGGACAATATTCAATTGAAAAGCACCCAAGAGGAAATTCTAAAGATAGAGACAAGAATGGATGCTGTAAATGAAGAGTTGAAACAGTATGGTGAGCATCAGGATCTTGTCAGTGAAAGCCAAGTATTGCAACAGACGTCGGAAGAATTGCGAAAAGAAATTGCCCACTATGAGGGACGGTTGAAGGGCTTTGAGGAAGATGAAGAACGATGTCAAAGAGAATTAGGAAGTGACTTGTACAGAAATGCCGATGAAAAACATAGACATCAGGTCATCGATATAAAGACCACTGAAATGGCAAATTCTGATCTGGATAAGTATTACAAAGCACTTGACAGGGCAATAATGCATTATCACGGTCTCAAAATGGCTGACATTAACAAGATCATCAAAGAGTATTGGATCAACACTTACAAAGGAAATGACATAGATACAATTGAAATTCGATCAGACGAGGAGGAGGGAAGCGGTGCAACCAAAACACGGCGAACTTACAACTACAGGGTTGTAATGATTAAAGGTGACACTGAATTGGACATGAGAGGACGCTGCAGCGCTGGACAAAAGGTTTTAGCATCCATCATCATAAGGTTGGCCTTAGCGGAAACGTTCTGTCTCAACTGTGGAATTCTAACTCTCGATGAACCTACAACCAATTTGGACGAAGACAACAATGAGAGTCTGGCTAACCAATTGGCGTCAATCATTAAAACTCGTCAGCAACAAAGGAACTTTCAACTTGTAGTCATCACAAATGACGAGGAATTTGTGCTAAAGCTCGGCAGGGCTGACTTTGTAGACTACTACTTCCGGATCAATAAGGACGACAGCGGTTACTCAAAGATTACGAGGCAGAGTGTGGTTGCTGAAGAGTCTCTCTTGGATTAA

Transcript

alor_g2598.t1

Protein

Uniprot

Uniprot term	Description
Q9JIL8	DNA repair protein RAD50 OS=Rattus norvegicus OX=10116 GN=Rad50 PE=1 SV=1
A0A1L8GXM0	DNA repair protein RAD50.L OS=Xenopus laevis OX=8355 GN=rad50.L PE=1 SV=1
Q92878	DNA repair protein RAD50 OS=Homo sapiens OX=9606 GN=RAD50 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04423	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013134	Domain	RAD50, zinc hook	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004584	Family	DNA repair protein Rad50, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867	RAD50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000722	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0007004	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10866	RAD50; DNA repair protein RAD50	EC:3.6.-.-	DNA repair and recombination proteins	ko03400	deepkoala