Genomic Location: Acropora_loripes_27:371085...374159
NR annotation: XP_029190418.2, uncharacterized protein LOC114957226 [Acropora millepora]
Species Acropora loripes · all data for this species · gene families
| CDS |
| alor_g26867.t1 |
| Transcript |
| alor_g26867.t1 |
| Protein |
| alor_g26867.t1 |
| UniProt accession | Description |
|---|---|
| P79781 | Ubiquitin-ribosomal protein eS31 fusion protein OS=Gallus gallus OX=9031 GN=RPS27A PE=1 SV=3 |
| P15357 | Ubiquitin-ribosomal protein eS31 fusion protein OS=Drosophila melanogaster OX=7227 GN=RpS27A PE=1 SV=2 |
| P62992 | Ubiquitin-ribosomal protein eS31 fusion protein OS=Bos taurus OX=9913 GN=RPS27A PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000491 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UBL|NEDD8 · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01599 all species → | Ribosomal_S27 | Ribosomal protein S27a | Domain | Interproscan |
| PF12012 all species → | DUF3504 | Domain of unknown function (DUF3504) | Family | Interproscan |
| PF00240 all species → | ubiquitin | Ubiquitin family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR002906 all species → | Domain | Small ribosomal subunit protein eS31 | Interproscan |
| IPR019956 all species → | Domain | Ubiquitin domain | Interproscan |
| IPR042838 all species → | Family | Uncharacterized protein KIAA1958 | Interproscan |
| IPR038582 all species → | Homologous_superfamily | Small ribosomal subunit protein eS31 eukaryotic-type superfamily | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR021893 all species → | Domain | Domain of unknown function DUF3504 | Interproscan |
| IPR011332 all species → | Homologous_superfamily | Zinc-binding ribosomal protein | Interproscan |
| IPR013762 all species → | Homologous_superfamily | Integrase-like, catalytic domain superfamily | Interproscan |
| IPR011010 all species → | Homologous_superfamily | DNA breaking-rejoining enzyme, catalytic core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46963 all species → | SIMILAR TO RIKEN CDNA E130308A19 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
alor_g26867.t1.Genes whose expression across the transcriptome samples of Acropora loripes tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora loripes, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
