Detailed information of alor_g3945.t1 in Acropora loripes

Genomic Location: Acropora_loripes_83:244064...260736
NR annotation: CAH3125428.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9W7E7Mothers against decapentaplegic homolog 5 OS=Danio rerio OX=7955 GN=smad5 PE=2 SV=1
Q9R1V3Mothers against decapentaplegic homolog 5 OS=Rattus norvegicus OX=10116 GN=Smad5 PE=1 SV=1
O15198Mothers against decapentaplegic homolog 9 OS=Homo sapiens OX=9606 GN=SMAD9 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyMH1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF03166MH2MH2 domainFamilyInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03165MH1MH1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001132DomainSMAD domain, Dwarfin-typeInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR036578Homologous_superfamilySMAD MH1 domain superfamilyInterproscan
IPR017855Homologous_superfamilySMAD-like domain superfamilyInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR013790FamilyDwarfinInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR013019DomainMAD homology, MH1Interproscan
IPR003619DomainMAD homology 1, Dwarfin-typeInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR033196FamilyExosome complex component Rrp43Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13703SMADInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007179Biological Processtransforming growth factor beta receptor signaling pathwayInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0030509Biological ProcessBMP signaling pathwayInterproscan
GO:0060395Biological ProcessSMAD protein signal transductionInterproscan
GO:0070411Molecular FunctionI-SMAD bindingInterproscan
GO:0071144Cellular Componentheteromeric SMAD protein complexInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan

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