Genomic Location: Acropora_loripes_125:74816...98333
NR annotation: XP_029179422.2, probable ATP-dependent RNA helicase DDX46 [Acropora millepora]
| CDS | |||||
| alor_g5324.t1 | |||||
| Transcript |
| alor_g5324.t1 |
| Protein |
| alor_g5324.t1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q569Z5 | Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2 | ||||
| Q62780 | Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1 | ||||
| Q4TVV3 | Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | zf-C2H2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | Domain | Interproscan |
| PF21549 | PRDM2_PR | PR domain zinc finger protein 2, PR domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR046341 | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR001214 | Domain | SET domain | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR014014 | Domain | RNA helicase, DEAD-box type, Q motif | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR000629 | Conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24031 | RNA HELICASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003724 | Molecular Function | RNA helicase activity | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12811 | DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5 | EC:5.6.2.7 | Spliceosome | ko03041 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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