Detailed information of alor_g5418.t1 in Acropora loripes

Genomic Location: Acropora_loripes_186:195506...199219
NR annotation: XP_015751223.1, PREDICTED: mitochondrial import receptor subunit TOM20 homolog [Acropora digitifera]
Species Acropora loripes · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6H7B1Mitochondrial import receptor subunit TOM20 homolog OS=Bos taurus OX=9913 GN=TOMM20 PE=2 SV=1
Q15388Mitochondrial import receptor subunit TOM20 homolog OS=Homo sapiens OX=9606 GN=TOMM20 PE=1 SV=1
Q5RA31Mitochondrial import receptor subunit TOM20 homolog OS=Pongo abelii OX=9601 GN=TOMM20 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008037 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02064
all species →		MAS20MAS20 protein import receptorFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002056
all species →		FamilyProtein import receptor MAS20Interproscan
IPR022422
all species →		FamilyProtein import receptor MAS20, metazoanInterproscan
IPR023392
all species →		Homologous_superfamilyMitochondrial outer membrane translocase complex, Tom20 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12430
all species →		MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005742
all species →		Cellular Componentmitochondrial outer membrane translocase complexInterproscan
GO:0006605
all species →		Biological Processprotein targetingInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0008320
all species →		Molecular Functionprotein transmembrane transporter activityInterproscan
GO:0016031
all species →		Biological ProcesstRNA import into mitochondrionInterproscan
GO:0030150
all species →		Biological Processprotein import into mitochondrial matrixInterproscan
GO:0030943
all species →		Molecular Functionmitochondrion targeting sequence bindingInterproscan
GO:0031307
all species →		Cellular Componentobsolete integral component of mitochondrial outer membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17770TOM20; mitochondrial import receptor subunit TOM20-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora loripes tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora loripes, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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