Gene detail

Detailed information of alor_g9365.t1 in Acropora loripes

Genomic Location: Acropora_loripes_5:8295766...8333204
NR annotation: XP_029180573.2, CAD protein-like [Acropora millepora]
Species Acropora loripes · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alor_g9365.t1

ATGGTTGGTTACCCTGAGTCCCTCACAGATCCATCTTACAGATGTCAAATTCTGACGCTGACTTATCCTTTGATTGGAAACTATGGGGTTCCTGATGGAGTGAAAGATGCCAATGGATTAATTGCAGAACTTGAGTCCGACAAAATTTGGGCATCTGCTTTGATAGTTGGAGATTATGTTGAGGAATACAGTCATTGGAATGCAAAAAAATCGCTCTCACAATGGCTTGAAAAGGAAGAAGTACCAGGAATTTCTGGGATTGACACACGAGCACTAACTAAGAAAATAAGAGAAAAAGGATCTATGCTGGGAAAAGTTGTTATTGAAGGAGTAGAAGCAGATTCAGTGTCATTTGACGATCCAAACAATAGAAACCTTGTTGCTGAGGTTTCATTAAAGGTGCCCAGAGTGTTTAATCCTGGTGGAGAGCTGCGAATCATTGCTGTTGATTGTGGCATAAAGTATAATCAGATCAGATGTCTCATAACCAGAGGAGCTGCTGTTAAAGTTGTGCCTTGGGATTACGACTTTAATAGTGATGTTGAAAAAGGAGAGTGTGATGGGATCTTCCTTAGCAATGGACCTGGAGATCCTACATTTACAACTGAGACAACAAAGAACATTAGAAAGTTTACGGAACGCACCAACACCAAACCTTTGTTTGGTATTTGCTTTGGTCACCAGCTCTTAGCTCTGGCTGTAGGATGTACCAGCTTTAAAATGAACGTCCAGTTTCATCCAGAGCACATGGCAGGGCCACAGGACTTAGAAATGTTGTTTGATGTGTTTTTAACAACAGTGCGACAATACAAAGAGGACGTTGGAGTTGTAACATCTGTCAGAGATCAAATTCAGCAGCTTCTCAAATTTGAACCATTGGCACTGCCAAGTGACAAAAAACCAAAGAAAGCTGTTAAAGCCCTAAAGGAGGAAGGAATCCAGTCAGTTTTGGTGAATCCCAACATTGCAACTGTGCAAACATCAAAGGGCCTTGCTGACAAAGTTTACTTTCTTCCCATTACAGTTGATTATGTAACCCAGGTTATTCAGAGTGAGCACCCTGATGGGATTTTGTTGTCATTTGGTGGCCAAACTGCACTCAACTGTGGTATTGAACTACAAGAGAGTGGTGTGCTGGAAAAATACCATGTTCATACTCTGGGAACACCTGTTAGCTCTATTGTTTGCACCGAGGATAGGAAGTTATTTGCAGAGAAATTGGCAGAAATTGATGAACATGTGGCACCAAGTGAGGCTGTGTATTCAGCGGACGAGGCCATTGCTGCAGCTAAGAGGCTTGGTTATCCTGTTTTGGTGCGAGCGGCATTTGCTCTAGGTGGACTTGGATCAGGGTTCGCACAGAACAGAGAGGAACTGGTATCTCTTGTCACAGCAGCATTTGCACACACTAAACAAGTAAACCTTGACAAGTCCTTGAAAGGGTGGAAGGAAATTGAATATGAGGTTGTCAGAGACAGATATGACAATTGCATCACGGTTTGTAACATGGAGAACGTAGATCCCCTTGGAATTCACACTGGCGAGTCTATTGTTGTGGCTCCAAGTCAAACACTGACAAATTCTGAATACAACATGTTACGAACAGCAGCTGTCAAAGTCATCAGACATCTGGGTGTTGTTGGGGAGTGTAACATTCAATATGCACTTAACCCTGATTCTAAACAGTATTATATCATTGAGGTGAATGCAAGATTATCACGAAGCTCTGCTTTGGCATCCAAAGCTACTGGCTACCCCCTTGCTTATGTCGCTGCAAAGTTAGCTCTTGGCAAATCGCTTCCAGATCTGCGGAACTCTGTTACCAACTCCACAACAGCTTGCTTTGAACCTAGTCTGGACTACGTTGTTGTGAAAATTCCTCGCTGGGACTTGAGCAAATTTGCTAGAGTTAATACAAAGATTGGAAGCTCAATGAAGAGTGTTGGTGAAGTCATGGGAATAGGACGGCGATTTGAAGAAGCTTTGCAGAAAGCTCTTCGAATGGTGAATGAAGCAAATTTGGGCTTTGACTCTCATGGGCACACAGCTTCTGACGAGGAGTTGAAGCAGCCCTCAGACCAGCGCATCCATGTTCTCGCAGCAGCGTTCAAGGAAGGCTACACTATTGATCATCTGTATGGACTCACCAAAATCGACAAGTGGTTTTTGTACCGAATGAAATGCATCATGGACTATGCTCTGAAGCTAAAGAGTTACAGAGATGAAAATGAGGCTACAGAAGTGTCGTATGAGCATTTGCTGGGAGCAAAACAGCTGGGATTTTCAGATAAACAAATTGCCAAATGCATTCGCACTACGGAAATTGCAGTGAGAAAAGCACGCCAACACTATGGTATAATGCCATTTGTCAAGCAGATAGACACAGTGGCAGCAGAATACCCTGCTTTTACAAACTATTTGTACCTCTCGTACAATGCACACGAGAACGATGTGGACTTTGAAGGCGGAGCATGTATGGTGATAGGTTCTGGTGTGTATAGGATTGGCAGCAGCGTGGAATTTGATTGGTGCTCAGTTGGGTGCATCAGAGAATTAAGAAAGTTGAAAAAGAAGGCAATTATGGTGAATTACAACCCTGAAACTGTTAGCACAGATTACGATGAGTGTGAGAGATTGTACTTTGATGAAATTTCATTTGAGACTGTTATGGATATTTACGAGAAGGAGAATCCAGAAGGTATTATTCTTAGCATGGGAGGGCAGTTACCAAACAACATAGCCATGCAGTTACACAGGCAACAGGTTCGCATCCTTGGCACGTCTCCAGAGATGATTGACAATGCAGAGAACAGATTTAAGTTTTCAAGAATGTTGGACAACATTGGAATTTTGCAGCCACAGTGGAAAGTTCTTACAACCCTTGAGGATGCAAAGAAGTTCTGTGCAACAGTTGGTTATCCATGCCTTGTGCGTCCGTCCTATGTGCTAAGTGGCGCTGCCATGAATGTGGCACACTCGGACCACGACCTTGTCATGTACCTTGGAAATGCCAAATCTGTATCGAGTGAGCATCCGGTGGTTATTTCCAAATTCATTCAGAATGCCAAGGAGATAGACGTTGACGCAGTAGCTTGTGATGGCGAGGTTGTTGTCATGGCTGTGTCAGAGCACGTGGAGAATGCCGGAGTGCATTCTGGGGATGCCGCTATGGTTCTCCCTCCTCAAGATCTGAATGAGGAGACCCTCAAGAAAATTCACAAGATCTGCTATGACGTTGGCCAAGCTCTGATGGTAACAGGCCCATTCAACATGCAGTTGATTGCCAAGGACAATGAGCTTAAAGTGATTGAATGCAACCTCCGTGTTTCTCGTTCATTTCCATTTGTGTCAAAGACACTTGATCACGATTTTGTTGCCATAGCAACAAGATTGATTTGCGGTGTGCCTGTGGAACCCATCCATGAGAATTCTGCGTGTGGCAAAGTTGGCGTCAAGGTCCCGCAGTTTTCGTTTTCGCGTTTAGCTGGTGCAGACGCGATGTTGGGTGTGGAGATGTCGAGCACAGGGGAAGTTGCCTGTTTTGGTGAAAACAGATATGAAGCTTATCTCAAAGGACTGTTGAGTACAGGCTTCAAGATCCCTCAGGAATGCATTCTCCTGTCCATTGGTAGCTTCAAGTCTAAAACTGAAATGCTCCCTAGTGTGCGAACGCTACAAGAGCTTGGTTTCAAGTTGTATGCGAGTCCTGGAACTGCTGACTTCTACTCGGAGCATGGGATTAAGATAAAGACAGTTGATTGGCCATTCGAGGAAGGCGGCAATGGTGCGAACGAGAGAAGTATTTTGGATTACGTAGCACAAAACAAGTTTGACATGGTCATCAACCTGCCGCTCAGGACGTCCGGCTCGCGAAGGGCGTCGTCCTACATTACGCACGGTTACCGCACTCGGCGCATGGCAATAGACTTCTCCATTCCTCTGATCACAGACATCAAATGTGCTAAGTTATTCATCGAGGCCCTAAAAAGAATCGGCGGTGCGCCCAAACTGAAGACTCACATCGACTGCATGTCATCTGGGCGGGTGGTTCGTTTGCCGGGGCTCATTGATGTCCATGTGCACATGCGCGAACCTGGAGCGACTCACAAAGAAGATTTCTCATCCGGAACAGCAGCTGCCCTGGCCGGCGGCGTGACAATAGTGTTAGCTATGCCAAACACAAACCCCGCTATAGTCAATGAGTCGTCCTTCAACTTGGCAAGAAAGTTGGCGTCAGCCGGTGCTCGTTGTGATTATGGTCTGTATGTTGGCGCTAGTTCGGAGAACTATTCCACAGTGAAAGACTTGGCGCATCTTGCCGCTGGTCTTAAGATGTACTTGAATGAGACTTTCACAACACTCCGACTTGATGAAATGTCAACATGGATGAAGCATCTTGAGCAATGGCCGAAGCATTTGCCGCTGGTTTGTCACGCTGAAGGTCGCACCACTGCAGCCATCTTGTTGCTGGCTCAGTTGACTGAGAGACCTGTGCATATCGCGCATGTTGCACGTAAAGAAGAGGTGCTCGTTATCCGCGCTGCAAAAGAGAAAGGAATTCAAGTCACTTGTGAAGTTTCTCCCCACCATTTGTTCTTAACCGAAGATGACGCAGACAAGATTGGTCTGAAGAGAGCCATGGTCAAGCCACCGCTTGTCACCGCCGAGGACCAGAAGGCCCTCTGGGATAATATTGACGTCATTGATTGCTTCGCAACCGATCACGCACCGCATACCCTGGAGGAGAAAGACTCTGAAAAACATCCACCCGGTTTTCCTGGTTTGGAGACGATGCTTCCTCTGTTATTGACCGCGGTGCATCAGGGGAGGCTAACAATCGATGACATCATACTCCGTTTGTGTACCAATCCGCGCAAAATCTTCAGTCTTCCGGAGCAGAAGGACACTTACGTAGAAGTTGAAATTGGCGAAGAATGGACCATTCCTGCGGCCATGACATACTCTAAAGCACAGTGGACGCCATTTGCTGGTTTGAAGGTTAATGGCTGTGTAAGGAGAGTTGTGATGAGAGGAGAAACAGTCGTCATAGATGGCAAGGTGCTGGCGAAGCCTGGCTCAGGTCAAGACGTTCGCGTTATCAGCTCCGTTCCCTTAGCCCCGCTCCCTCAAACGTACCAACCAGCGCCTTTATTGCCACCTGCAAGTCCGCGGAAGACTGACAGTCGCTGGGCTTTTCCTCCGGCTGTACATCGGTTTGTTGACACGCATTATGGATCCGAGCCTCCTACTCTGTCTGCTGGAGAGGGAACCCCAGAATCTTTACCTCAATCTTATCACACCCCACCCCTACCTCCACAAGCGTTGTCACCAGGTGGTCCACATACTCATATACCGATGACATTTCCTCGTGTGCCACCCCACGTGTTTTTTGGTCAACACATCTTGAGCGCTAGCAAATTCAACAGAGACCAGCTTCATTACCTGTTCAATGTGGCTCATTACATGCGCCTCCTAGTGCAAAGAGAAGGCGGATTGGATCTGTTGAAGGGAAGAGTTATGGCTTCGCTTTTTTTCGAGGTCAGCACAAGGACGTCCTCTTCCTTTGCCGCAGCGATGCAGAGGCTTGGAGGATCGGTTATCTTCATGAAGGAGAGCGAATCCTCGGCAAAGAAAGGAGAGAGTCTAGCAGATTCTGTGCAAGTTATGTCTTCGTATTGTGATGTGGTGGTTATTCGTCATCCACAGCCAGGAGCCGTTCAGGAAGTTGCAGAGCATTGCCGCAAGCCGGTCATCAACGCGGGCGACGGAGTCGGAGAACACCCTACCCAGGCTCTTTTAGACGTGTTCACCATCCGCGAGGAGATTGGAACGGTGAATCGTCTTACGGAAGAATTTCTAAATCTCATGGATGCCCTACCCGACACAGATGTCCTTTACGTCACGAGAATCCAGCGCGAAAGGTTTAGTAGCAAAGAGGAATATGAAAAGGTTTTTGGAAGTTATGTCATCACACCTGAGATTCTAACTGAAGCCAAGGAAAAGATGGTCGTGATGCATCCCTTACCACGAGTCAATGAGATCAGTGTGGAAGTTGATTGCGATCCTCGTGCTGCATATTTCCGCCAAGCTGAGTATGGCATGTACATTAGGATGGCTCTTCTCTCTCTTGTGTTGGTCAAAAGCTGA

Transcript

alor_g9365.t1

Protein

alor_g9365.t1

MVGYPESLTDPSYRCQILTLTYPLIGNYGVPDGVKDANGLIAELESDKIWASALIVGDYVEEYSHWNAKKSLSQWLEKEEVPGISGIDTRALTKKIREKGSMLGKVVIEGVEADSVSFDDPNNRNLVAEVSLKVPRVFNPGGELRIIAVDCGIKYNQIRCLITRGAAVKVVPWDYDFNSDVEKGECDGIFLSNGPGDPTFTTETTKNIRKFTERTNTKPLFGICFGHQLLALAVGCTSFKMNVQFHPEHMAGPQDLEMLFDVFLTTVRQYKEDVGVVTSVRDQIQQLLKFEPLALPSDKKPKKAVKALKEEGIQSVLVNPNIATVQTSKGLADKVYFLPITVDYVTQVIQSEHPDGILLSFGGQTALNCGIELQESGVLEKYHVHTLGTPVSSIVCTEDRKLFAEKLAEIDEHVAPSEAVYSADEAIAAAKRLGYPVLVRAAFALGGLGSGFAQNREELVSLVTAAFAHTKQVNLDKSLKGWKEIEYEVVRDRYDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNSEYNMLRTAAVKVIRHLGVVGECNIQYALNPDSKQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGKSLPDLRNSVTNSTTACFEPSLDYVVVKIPRWDLSKFARVNTKIGSSMKSVGEVMGIGRRFEEALQKALRMVNEANLGFDSHGHTASDEELKQPSDQRIHVLAAAFKEGYTIDHLYGLTKIDKWFLYRMKCIMDYALKLKSYRDENEATEVSYEHLLGAKQLGFSDKQIAKCIRTTEIAVRKARQHYGIMPFVKQIDTVAAEYPAFTNYLYLSYNAHENDVDFEGGACMVIGSGVYRIGSSVEFDWCSVGCIRELRKLKKKAIMVNYNPETVSTDYDECERLYFDEISFETVMDIYEKENPEGIILSMGGQLPNNIAMQLHRQQVRILGTSPEMIDNAENRFKFSRMLDNIGILQPQWKVLTTLEDAKKFCATVGYPCLVRPSYVLSGAAMNVAHSDHDLVMYLGNAKSVSSEHPVVISKFIQNAKEIDVDAVACDGEVVVMAVSEHVENAGVHSGDAAMVLPPQDLNEETLKKIHKICYDVGQALMVTGPFNMQLIAKDNELKVIECNLRVSRSFPFVSKTLDHDFVAIATRLICGVPVEPIHENSACGKVGVKVPQFSFSRLAGADAMLGVEMSSTGEVACFGENRYEAYLKGLLSTGFKIPQECILLSIGSFKSKTEMLPSVRTLQELGFKLYASPGTADFYSEHGIKIKTVDWPFEEGGNGANERSILDYVAQNKFDMVINLPLRTSGSRRASSYITHGYRTRRMAIDFSIPLITDIKCAKLFIEALKRIGGAPKLKTHIDCMSSGRVVRLPGLIDVHVHMREPGATHKEDFSSGTAAALAGGVTIVLAMPNTNPAIVNESSFNLARKLASAGARCDYGLYVGASSENYSTVKDLAHLAAGLKMYLNETFTTLRLDEMSTWMKHLEQWPKHLPLVCHAEGRTTAAILLLAQLTERPVHIAHVARKEEVLVIRAAKEKGIQVTCEVSPHHLFLTEDDADKIGLKRAMVKPPLVTAEDQKALWDNIDVIDCFATDHAPHTLEEKDSEKHPPGFPGLETMLPLLLTAVHQGRLTIDDIILRLCTNPRKIFSLPEQKDTYVEVEIGEEWTIPAAMTYSKAQWTPFAGLKVNGCVRRVVMRGETVVIDGKVLAKPGSGQDVRVISSVPLAPLPQTYQPAPLLPPASPRKTDSRWAFPPAVHRFVDTHYGSEPPTLSAGEGTPESLPQSYHTPPLPPQALSPGGPHTHIPMTFPRVPPHVFFGQHILSASKFNRDQLHYLFNVAHYMRLLVQREGGLDLLKGRVMASLFFEVSTRTSSSFAAAMQRLGGSVIFMKESESSAKKGESLADSVQVMSSYCDVVVIRHPQPGAVQEVAEHCRKPVINAGDGVGEHPTQALLDVFTIREEIGTVNRLTEEFLNLMDALPDTDVLYVTRIQRERFSSKEEYEKVFGSYVITPEILTEAKEKMVVMHPLPRVNEISVEVDCDPRAAYFRQAEYGMYIRMALLSLVLVKS

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91437	Multifunctional protein CAD OS=Squalus acanthias OX=7797 GN=CAD PE=2 SV=1
B2RQC6	Multifunctional protein CAD OS=Mus musculus OX=10090 GN=Cad PE=1 SV=1
P27708	Multifunctional protein CAD OS=Homo sapiens OX=9606 GN=CAD PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001105 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF02729 all species →	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan
PF00988 all species →	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	Domain	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00185 all species →	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR036901 all species →	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR006130 all species →	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR036480 all species →	Homologous_superfamily	Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily	Interproscan
IPR006132 all species →	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR006275 all species →	Family	Carbamoyl-phosphate synthase, large subunit	Interproscan
IPR002474 all species →	Domain	Carbamoyl-phosphate synthase small subunit, N-terminal domain	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR006131 all species →	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0016743 all species →	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0004070 all species →	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0004151 all species →	Molecular Function	dihydroorotase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0019240 all species →	Biological Process	citrulline biosynthetic process	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11540	CAD; carbamoyl-phosphate synthase / aspartate carbamoyltransferase / dihydroorotase	EC:6.3.5.5 EC:2.1.3.2 EC:3.5.2.3	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora loripes tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora loripes, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →