Detailed information of alor_g9543.t1 in Acropora loripes

Genomic Location: Acropora_loripes_5:10513031...10545491
NR annotation: XP_029199167.2, E3 ubiquitin-protein ligase CHFR-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A5WW08E3 ubiquitin-protein ligase CHFR OS=Danio rerio OX=7955 GN=chfr PE=2 SV=1
Q6P256E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis OX=8364 GN=chfr PE=2 SV=1
Q5FWP4E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis OX=8355 GN=chfr PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17979zf-CRDCysteine rich domain with multizinc binding regionsDomainInterproscan
PF00498FHAFHA domainFamilyInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040909DomainE3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc bindingInterproscan
IPR000253DomainForkhead-associated (FHA) domainInterproscan
IPR036265Homologous_superfamilyHIT-like superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR052256FamilyE3 ubiquitin-protein ligase CHFRInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16079UBIQUITIN LIGASE PROTEIN CHFRInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0007093Biological Processmitotic cell cycle checkpoint signalingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11967ANKIB1; ankyrin repeat and IBR domain-containing protein 1EC:2.3.2.31
Ubiquitin systemko04121deepkoala

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