Gene detail

Detailed information of alvinactis_v1_g10385 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:6450071...6497830
NR annotation: PFX21960.1, Lysine-specific demethylase 6A [Stylophora pistillata]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g10385

ATGACTAGTCTGAAGCATGAGAAACCATGTAATATCATTGCTGTAGATGTTGGAACTACTCTTATAACATGCCATCTCTTTGACAAATCGGGCCTGTCCAAGTACAACACTTCAAGAAAGATAGAGCTGTTATACCCTCAGCCTGGATGGGTTGAAATAGAACCTTATCAATTATGGGAACAGTTTCAGGATGTGATCTGGGAAACAATGGCAGCCGAGCAGATAACACCAGAAGATGTTACATGCATTGGGATAGCAACACAAAGAGCAACCTTCTTAACAATGGATAGAAAGACTGGCAAACCACAACATAATTTTATAACATGGCAAGATCTTCGCTCAAATGAACACACAGAAAACTGGAACAAATCCTTAGCTCTAAAGGCTTCAATGAGGCTTGATTATGTCCTAAAACACCATAATGAACTTCGAAGGAAGGCAGAGAATGGATCACTTTTATTTGCAACAATAGATACATGGTTGCTATGGAAACTAACCAGAAATCGACATCATATTACTGATTACTCCAATGCCAGCTCAACAGGAATGTTTGACCCTTTTGTGTTGGAATGGAGCTCACTTCTTACATCATTGTTGAATATTCCTGTGTCAATACTGCCAAAGATTGTGGATACATGTGGCACTATCTGTGACTCAGCTAAAGAAATATTTGGTGCACCAATTCCTATTAAGGCTGTGGTCGCTGATCAGCAATCTGCAATGTTTGGGCAATGTTGTTTTGACGTTGGAGATGTCAAGTGTACGTTTGGTACTGGTACATTTATTGATGTCAACACTGGCAAGTTTCCTCATGCTTCAATAGCAGGCCTCTATCCTCTTGTGGGGTGGAAAATAGGTTCTGAAATTGTGTACGTGGCAGAGGGGAGTGCCTCAGGTACTGCCACAGCTATTGAATGGGCACAAAGTGTGGGACTTTTTGATGATGTGAAGCAAACAAGTGCTATGGCGTTTTCTGTAGAAAATTCTGATGGTGTCTATTTTGTACCTTCTTTTCATGGCCTCCAGGCACCTATCAACGACAGTAAGGCTTGTGTTTCACTAATGGGAATCAAGTCATCGACAACCAAGGCTCATATTGTTCGTGCAATACTAGAATCCATAGCATTTAGATTCATGGAACTTTTTGAAACTGTTCTCGAAGAAACACAAGTTCCTGTCATGGCGTCAATCAAAGCGGACGGTGGAGTATGCAACAACGATTTTGTAATGGAACTCACCAGTAGTTTAATAGGGCAAAGCATGGACAAGCCCTCACAAACCGATATGGCAGCCCTTGGTGCTGCCTTCTTGGCAGGGTTGGCTTCAGGTGTCTGGACATCCCGCGATGAACTGAAAGCGATAAGATGTACCCGCGCATTGTTCCAGCCCAAGGCTTCGATACATGAAAGATACAAAAAGACTGTAAAGGAATGGAAGGATGCTGTGAACAGAAGTAGAAATTGCCGGTTATATGGCTTTCTGCGACAGCACGACCCCATTGGTGATCCCGCGTTGCCAAATCTAAACCACAGATCATTACTACTAAAGGATGCCCCATTTTTATATGGTATTGGACTAGTCTATTTTAGCTTTTCTGCATACCAGTGGGCAATAAAAGTCTTTCAACAAGTCCTTTACTTAGATCCTGGTTTTAGTTGTTCAAATGAGGTTCATTTAAGACTGGGAATAATATACAAGGCCCAGAATAACCATGAAGCAAGTATAAAGCATTTTCACATGGCACTGATGGATTCCAATCCATGTTCATTATCGAAAGAAGAAATCCACTTTCATCTTGGTCACCTTTTTGAGATGCAGAACAAATGCCAAGAGGCACAGGAGATGTATGAGACAATCATCAATTCCCCTGGACTACCCAATACCGTAAAGGCTAATGCCTATAAACTACTAGGATGGATGTACTATAACAAAGATCATCTTGGTGATAGAGCCAGTAGAATGCAAAAAGCTGTTCAACTGTTACAAAAAGCCATAGAGACAGACCCCAACAATGGTTCATCATGGTATCTAATTGGAAGATGTTATGCAATGCAAGGAAAGGTGCATGATGCCTTTACATCGTACCGGCATGCCATTGATAAGTCAGAAGCCAATGCAGATACCTGGTGCTCTATAGGAGTGTTGTACCAACAGCAGAACCAACCAATGGATGCTCTACAAGCCTATGTTTGTGCTATACAACTAGACCCTACACACGTTGCTGCATGGACAGATCTCGGATACTGTATGAAGCATGTGATCAGCCAAGCGATGCTGTCATGTGCTACAATGCTGCAAAGAAATATGgcagaaacagcagattggtcgagctttgtcacatcataccgtagtctgaatcaactggatgtttcaaagatacgGAATATACCTTCAGTCGGCGAGGCCTGGAAGTTGCCAATACCAGCTGAACTTACAACTAGGACAATGAGAAATGCTCAGgcaatagtacagcaacaacaacaaGTTAACAATCATTCCCAAGGTGTCGACATCAAACCACAGCAACCTATACCAACTTTAGTAAATACATCAGATCAACAAACAGAACATGAACAACAGATTCTACAGGGCCATGCCATTGTGACAACAGCACATGAGCCCAATAACTTTGCATTGCAAAACGGCGATGGCGAGCCACACCCATCAACATCTCACGATAGTAGTCAACATAGTAGTTTAGTCAGTACTTCAATTGGTTTGCCTCATATGGAGGTGCAAGGGAACGGACCGCAAAATGGTCCAATGGTGGTCTTATCTCAGGCTGACGGAACAGCTCTTTCTTCTATGAGTGAAGATCCTTTACTGTGCTCAGCGTCTAGTAGGACAGAAGGAAATGATGCAATGTCCACTTCATCTGCGCATTCTGATTCTACATTATTAACTGTGCAATCCATTGCCAACTTGTCTAGTAATACTCCAAGTCTTCTAACATCAATATCAGATACAAGTGTTTCATCTGCTGCCATGACTAGTGATGCATTGTTAAGATCTGACAATCCTACTTTAATGAGTAATGGTCCAGTTTCTTCAGAGGTTAATTCTAGTGGTGGCACTTTGGGGTCTCCGCTTCCAACACTAAACTACGCCACATCTCCAACACAAAAGTTCTTGACAAGTGTTTCATTTTCACCACATCTTACCCAGCCACTGACAGTAAATCCTTGTAGCTTGTCGCCAAACTCTAAGCAGTCGTTATTATCACCGCTGTTAATATCACCATCCATGAGTATCGCCCTGGCGTCGCCGAGTACGTCCAAGTCACCATTAACAGCTATAGGCCAGTCAGGATTTCAAGTACCTAAGGTGTCATTATTCTATGACTACATGGAATTACCGGCACTACCTAAACCTCCATACCCTCCACTACCCACTGATAAGTTGTCTCCTCCCACTCCAAGTATATCTGTGGAAAGTAGAAAAGATGCCTTTTCCCCTGCATTACAGAACTTCTGTTTGTCATCTGCTCAGCCTGTTACTGTTGTACGAGGCCTGGCAGCTGCTCTCAAACTAGATCTCAGCCTGTTCTCTACCAAGACCTTAGTAGAATGTAATGGTGATCACCAAGTAGAAGTTAGAACTCAGAGACAGCAAGCATCTGATGAGAATTGGGACACATCTGGTGAAAATAAAGTCTGGCTGTGCGGAAGTAGCAGGTCTTTCACAACTATATCAAAGTATGCGCAATATCAAGCCAATACATTTCAGGAATCACTCAAGGAGGAACAAGAGAGAGTTATGAGGGGAAGTGAGCCAATGCAATCGGACAGTGACTCGTCGTCTAGCTCCAAAAGTAGAAAGAGTATCAGGGGTAATAAGTTCAAATGGATCAAGTTTGGTACAAACGTTGACTTGTCAGATGAAAGAAAATGGAAGATTCAACTTCAAGAGCTGAATAAGCTACCACCATTTACAAGGGTTGTTGCTCCCAGTAACATGCTAAGTCACTTTGGTCACACTATACTTGGTATGAACTCTGTTCAACTCTACATGAAGATCCCTGGATCCAGGACTCCAGGTCATCAAGAAAATAACTGTTTCTGTGCCGTGAATATAAACATTGGTCCCGGTGACTGCGAGTGGTTTGCAACGCCTACTGAATATTGGGGAGTAATCCACAACCTGTGCGAAAAGTATAGCATCAATTTTTTAACTGGGTCTTGGTGGCCTGTGTTAGAAGAACTCTACGAGGAGCGTGTTCCTGTGTATAGATTTATTCAAAGACCtggtgatatggtgtggttaaacccaggtgttgtccactgggtacagtcattgGGTTGGTGTAACAACATTGCATGGAATGTTGGGCCCACAACAGGGCACGTATTTAGTATTGCTGTAGAGCGTTATGAATGGAATAAACTACAAGGTGAAAAGTCCATAGTTGCAATGATCCATTTAACCTGGAACCTTGCACAAAACATCCGAGTCACAGAGAAAAAAATATATGAACACATAAAGAGGATCCTTGAAAGAACGCTAAAATACTGTCAAGTTACTATAGAAAACCTAAAGCGTACTGGAATAGAAATACAGTGGCATGGCAAACAACCTGACGAATTCCCACATTATTGTTCTCAATGTGAAGTTGAGGTGTTTAATCTGCTGTTTGTGTTAGTTACAAATAACCGTAAACATCAAGTGTATTGTCAAGACTGTGCAAGGAAGACTAGCAGTACACTAGAAGGGTTTATTGTATTGAATCAATACACCATTGAAGAATTACTAGAAATTTACAAGTCATTTAAACTTTATACACTAACCAATGTGACGACGAGCGGTATTCAAAATGGCAGCACAACAGCACCGACGAGTCCTTCCAATGCAACGACAAGTACAACACTAACCAACGTTACCACTAATACACAGACGACCCTACAATCTACTTCACACTCTATCAATGCGACTACTACTACCAATACCACGCTAACTACATCCACAACAACGACTATTAAACCTACAACAATCCCGCCAACTTTTGCACCTGAACTATGTGAGACTGCGATGCTGAGGAATGGTTCTGATATGATCGGAGGTGAAATTCCTATTCACTTTTTGTCTCCCAAATTGATATACGTTGCACAAGAGAAAACGCCAATCGATCTCGAATGTAAGTTCTGTGCTTCAAGACCGTTGCCCTGGACGAAGATACTGTGGTACAAAGATGGTAGACGCCTTGTAAGCGGGACTGACAGGTTTCACATCTCAAAGCTGCGACATGATATACACGAGGGCTTGTATGAATGTAAGGTGGTAACCCCTAGCAACCAGACAGCATTGAAGATGTCCACTCTGATTGTTAACAAGGATCCTTTGTTCTCTATGATCCCATTAGTCTGGGCAAGAAACATCACATTCACCCGAACAACAAAGATCTTATGGCAACTCCGCGGTCATAGAATACTCAATGCTCTTAAAATTACATTAAAAGTACGACAGCTGGGCGAAACTACATGGCGGTACAAGAGAGAATTTTCTGAGTTTGTTAGTGGTTCAGCACTGCTAGATGACCTCGAACCAAGAACCATATACATTGCTAACGTGACGGCAGTAAACAGTTATGGACAAAAGGAGAGCAGGTCTATAGCGTTTTCGTCAAACGCCTGGAACTCAACAGATTTAGACTACGGAGTTCTCTCTCTTGACTTCTGCACAAGGAAAATCCTAGGGCTGATCACTGGCATTCTTGGCCTCTTCTTCACGATTGGTTTAATCTACTGCTGTTGTGTTTATCCCGCCTGTGAATTCAGAAACCATCAAGGATATACTTCACCTCCAGACCAGAGTAATGACAAGAATGACACGAAGAAATGTAAACAACATAATCACGACAAAGACAACGAACATGACTTCTGTACTGACTACATCAACGTGTTAAGATTCTTGAAAGAAGAGATGATGTTTTTCAGCTGTCAGGAAGTTGGCGAAATAAACGATCCAAGACATTGTGATATCAGAAAACTGCACATCGAACGAAACAGTAACACTTGCCGGTCGACTGAAAAAGTTGGTGTTGCTTGCCTTGCCTTCCATATTCAACCATTCCTCTGGATGACAATGGAGCGAagtgaaaactgttccagtttgtatgcatcgaaaacattcgaccatctcgatttccttgagaaaccactcattacattgggtattttgaacgggctactaatgatttcagcgacacttgggaatggaatgatcatcgttgccatcttgagatcacagaatctccgaaccccatcttacttactgataacaagtttggcgttcacagatcttctggttggtgtactgtatcatcctttatcgatcgttctgaccatggtttatttagaaaagaaaatggaaagagtatgtcttctcgtcactgtgtttaatatacaagaactgtttcttggttggctctcgtatgtcacgaccgcgtttatcagcattgacagatatttagcgataagtcttaggcaccgatacaaagtcattgttaccaggaaaagggttGTGCTGTCCATTATTACTTCGTGGATCGTAGGAGTGTCATTGCCTTTCATGGTGGAAATCGGCGTGGATGGAATGTCTACGTTTTGGGCGACCACATCGTTGGTCgttagttgtattatatatctaataacctgtattttctacgtcaagtccttcataactcttcatcgttacacagcacaagttcacgcccagcaacccaacccatcacaggaaaactttaatgttgtgaaatacaggaaaaccttcaagacgatggtggccatattgggatgttttcttttttgttgtctcccatatgtagttacagttttagcattttctcttgatggaaaccgtccagatttttatattctttcgcatcgcatatcgatgttaacctttggacttaattccagtataaatccagtcatttatctgacaaggtttacagatattcgccaggcatgtTGGAAAACACTGAGAATGATCTTCATCACCGATGAGGTTTCAACGCCAGAAACGCCTTCATAA

Transcript

alvinactis_v1_g10385

Protein

alvinactis_v1_g10385

MTSLKHEKPCNIIAVDVGTTLITCHLFDKSGLSKYNTSRKIELLYPQPGWVEIEPYQLWEQFQDVIWETMAAEQITPEDVTCIGIATQRATFLTMDRKTGKPQHNFITWQDLRSNEHTENWNKSLALKASMRLDYVLKHHNELRRKAENGSLLFATIDTWLLWKLTRNRHHITDYSNASSTGMFDPFVLEWSSLLTSLLNIPVSILPKIVDTCGTICDSAKEIFGAPIPIKAVVADQQSAMFGQCCFDVGDVKCTFGTGTFIDVNTGKFPHASIAGLYPLVGWKIGSEIVYVAEGSASGTATAIEWAQSVGLFDDVKQTSAMAFSVENSDGVYFVPSFHGLQAPINDSKACVSLMGIKSSTTKAHIVRAILESIAFRFMELFETVLEETQVPVMASIKADGGVCNNDFVMELTSSLIGQSMDKPSQTDMAALGAAFLAGLASGVWTSRDELKAIRCTRALFQPKASIHERYKKTVKEWKDAVNRSRNCRLYGFLRQHDPIGDPALPNLNHRSLLLKDAPFLYGIGLVYFSFSAYQWAIKVFQQVLYLDPGFSCSNEVHLRLGIIYKAQNNHEASIKHFHMALMDSNPCSLSKEEIHFHLGHLFEMQNKCQEAQEMYETIINSPGLPNTVKANAYKLLGWMYYNKDHLGDRASRMQKAVQLLQKAIETDPNNGSSWYLIGRCYAMQGKVHDAFTSYRHAIDKSEANADTWCSIGVLYQQQNQPMDALQAYVCAIQLDPTHVAAWTDLGYCMKHVISQAMLSCATMLQRNMAETADWSSFVTSYRSLNQLDVSKIRNIPSVGEAWKLPIPAELTTRTMRNAQAIVQQQQQVNNHSQGVDIKPQQPIPTLVNTSDQQTEHEQQILQGHAIVTTAHEPNNFALQNGDGEPHPSTSHDSSQHSSLVSTSIGLPHMEVQGNGPQNGPMVVLSQADGTALSSMSEDPLLCSASSRTEGNDAMSTSSAHSDSTLLTVQSIANLSSNTPSLLTSISDTSVSSAAMTSDALLRSDNPTLMSNGPVSSEVNSSGGTLGSPLPTLNYATSPTQKFLTSVSFSPHLTQPLTVNPCSLSPNSKQSLLSPLLISPSMSIALASPSTSKSPLTAIGQSGFQVPKVSLFYDYMELPALPKPPYPPLPTDKLSPPTPSISVESRKDAFSPALQNFCLSSAQPVTVVRGLAAALKLDLSLFSTKTLVECNGDHQVEVRTQRQQASDENWDTSGENKVWLCGSSRSFTTISKYAQYQANTFQESLKEEQERVMRGSEPMQSDSDSSSSSKSRKSIRGNKFKWIKFGTNVDLSDERKWKIQLQELNKLPPFTRVVAPSNMLSHFGHTILGMNSVQLYMKIPGSRTPGHQENNCFCAVNINIGPGDCEWFATPTEYWGVIHNLCEKYSINFLTGSWWPVLEELYEERVPVYRFIQRPGDMVWLNPGVVHWVQSLGWCNNIAWNVGPTTGHVFSIAVERYEWNKLQGEKSIVAMIHLTWNLAQNIRVTEKKIYEHIKRILERTLKYCQVTIENLKRTGIEIQWHGKQPDEFPHYCSQCEVEVFNLLFVLVTNNRKHQVYCQDCARKTSSTLEGFIVLNQYTIEELLEIYKSFKLYTLTNVTTSGIQNGSTTAPTSPSNATTSTTLTNVTTNTQTTLQSTSHSINATTTTNTTLTTSTTTTIKPTTIPPTFAPELCETAMLRNGSDMIGGEIPIHFLSPKLIYVAQEKTPIDLECKFCASRPLPWTKILWYKDGRRLVSGTDRFHISKLRHDIHEGLYECKVVTPSNQTALKMSTLIVNKDPLFSMIPLVWARNITFTRTTKILWQLRGHRILNALKITLKVRQLGETTWRYKREFSEFVSGSALLDDLEPRTIYIANVTAVNSYGQKESRSIAFSSNAWNSTDLDYGVLSLDFCTRKILGLITGILGLFFTIGLIYCCCVYPACEFRNHQGYTSPPDQSNDKNDTKKCKQHNHDKDNEHDFCTDYINVLRFLKEEMMFFSCQEVGEINDPRHCDIRKLHIERNSNTCRSTEKVGVACLAFHIQPFLWMTMERSENCSSLYASKTFDHLDFLEKPLITLGILNGLLMISATLGNGMIIVAILRSQNLRTPSYLLITSLAFTDLLVGVLYHPLSIVLTMVYLEKKMERVCLLVTVFNIQELFLGWLSYVTTAFISIDRYLAISLRHRYKVIVTRKRVVLSIITSWIVGVSLPFMVEIGVDGMSTFWATTSLVVSCIIYLITCIFYVKSFITLHRYTAQVHAQQPNPSQENFNVVKYRKTFKTMVAILGCFLFCCLPYVVTVLAFSLDGNRPDFYILSHRISMLTFGLNSSINPVIYLTRFTDIRQACWKTLRMIFITDEVSTPETPS*

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70546	Lysine-specific demethylase 6A OS=Mus musculus OX=10090 GN=Kdm6a PE=1 SV=2
O15550	Lysine-specific demethylase 6A OS=Homo sapiens OX=9606 GN=KDM6A PE=1 SV=2
P79457	Histone demethylase UTY OS=Mus musculus OX=10090 GN=Uty PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003599 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21326 all species →	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF21322 all species →	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13431 all species →	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048560 all species →	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR048562 all species →	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR051630 all species →	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR046941 all species →	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666 all species →	Cellular Component	MLL3/4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g10385.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →