Gene detail

Detailed information of alvinactis_v1_g10497 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:7948744...7954806
NR annotation: XP_020903885.1, uncharacterized protein LOC110242266 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g10497

ATGGACGACCTTCCAGACGAGATTATCTCAAGTATTCTTGAATATCTCGATCCTGTTACTAAACTAAGAACATCTCTTGTAAGTAGGAGGTTTTATGAGATTGCCACAGATCCTCTGATCCACAGGTCTGCGTCGTTTAGTGCGTGGGACTATCTTCCAGAGAAGCTAATCACTACGTACGTTAGGTTATATGGGTCATATTTGAGGTCCTTGGACCTACAAGACTGCTATTGGCTGGGACCTTCTTTCATGCCTGTCATACAACAGTGTTGCAGACATCTAAGTTCACTCAACTTACTGGGTTGTAGTGAAATCCCTGTGAATGTGATTGTCATTATTTTCAAGCAGAATTGTAACCTAAGACACTTTGGGTGGACTGTTGGATTGGATTTCTTATTGAAGTTGAAAAATATCAATTCTGCAGCAGGACGTCACGCCATTGAACAAATTAATGGGCTTGCTGTTCTCTTTGAAAACTTGACGTCACTGAAGTTGGGCTTGTTAGTGTGTTCTGCGATTTCTTACAGAGATGGATTTGAGCCAGAGGCAGCTGTATTCACTCATGTTTTATCAAGGATCATTTCCCCAAACTTGAAGAAGCTCACGGTTAGTTGTCTTGAAAGGGGACAACTAATGCAGCAACCAAAGCAAGCAAGAGTTTTGCTTGAACTTCACGTTGAGCTCGAGCCATTGGACCAGATTTCAATTAGTATTTCATCGATGGATATGAAAAATTATTTCGCTAAGACAAGAAATGAATTAACTATTGCCGCCATCTCTCAACACCACGGCATAATCAAAGGATGGCTGAAATATGCCACAAGTCAAAATGTACATATAATCAAATCCCTTGAGGTTCCTGGGCCACCTTTTTTGAACTTTTGGATTCCTTTACTTGGAAATGGTTTAAATTATTGTGCAATTGCTGACATCAAAAGTCTGGACATTAGTTCATCACACGACATTCCAATATACTGGATGATATCAGTACTGAGGGCCAATTCATTAACATTTTTAAATTTATCAAATATGGAGTGTGTTACAGGGTACCTGCTGGAAGTTATTTCTGAGGCGTCGCCATGTTTAAAAAGCTTGAATGTGCAAGGATGTCATGACAGCCTTGATCCAGTAGgagggaagatgagaggagaaaagaaaagaggagaaaagagtgaaggagaggagagATTATTTTTTATTGGAGGCCTGAAAGCAATAGCATCAAGGTGTCGTTATCTCCGACATCTTAACCTTGGCAGCATTCATCAACATTCATGTGGACCAAATAATGATCTCCTTGAAATATTATCAAGTATCAAATACTTGATATCAGTGAGCTTGTCTGGATGTAGCACCATTCCATTCAAAGCAAAGCAAGACCAAGAAATGCCCTCGGAATGCAACACTGATGGAGAAGAGAAGACCGAGGAAAGTCTGTCTAACGATGACGAACAATCATCTCGCATTAATGATGACCATTGTCACAATGGCTTTGAGATGCCTAATTCTTGTTTGAAAACATTTATAAACTCATGTACCTTTCTGCATCAAATTGAAATCATAAATGTAGGATTTCATTCCGTTTTGAGAAAAGGATGGATGATAAGTCGACCACCACCAGAGAGAGCGCATCTCATTTGGGATTGTCCAGACAACGAGGGTGAATTCCTGAAGGCTTTATCTTTCTGTTCTTGTTTAGAAAGACTGACACTTGCAGGTTTGGATGTTCGTGGTGGTCTTGATTTTTTACTCAAGATAACATCATCTTGTCAAAGGTTGTATTTCCTCTCACTGGCACAGCTCAGGGGTCTGGAGATGGTAAACGTCCTGCCGACACTAAACAGGGCTTTATCTTGTTGCACAAGCTTGAAACAGTTTAGGTTTGAACAGTCCTATTTCCCTGTGCCTCATTCGTTTACAACAGCTTTATTCGACGTGAAATGCCTGGAGTCGCTCTGCATAATTACCAAGGGTGGAAGTATTGCGGTATCAACAATCCTACCTTTGTTTGAGAAGTGTCAAAAACTGCGGGTTTTACAGATTTGTGCCGATGCCTCGTCCTCAGAGGAAACATTTCGTAATCTGACTAACATTCTCTATCACAGATATGCTCGTGAGCGGCCTGGGTTGGCAGTTTGTTTGTTTCCTTACGACAGCAACACGAGAGATCTACACGACAAGCTTTTCAATCACGCTCATGAACATTCTTTTCCCTTGATTCATTTGAAAAACCTATCACTTTTTAGCTCTGAAGTTGCCACCAGAATATATTAG

Transcript

alvinactis_v1_g10497

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF19729	FBXL18_LRR	F-box/LRR-repeat protein 18, LRR	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR045627	Domain	F-box/LRR-repeat protein 18, LRR domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10284	FBXL18; F-box and leucine-rich repeat protein 18	-	Ubiquitin system	ko04121	deepkoala