Gene detail

Detailed information of alvinactis_v1_g10737 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:11246545...11300575
NR annotation: CAD5117873.1, DgyrCDS6618 [Dimorphilus gyrociliatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g10737

ATGGCGCACTTCACGGTGAATCATTACTTTCAACAGGTTGATGAAGCGTTGAGTTCAAAAGATGGCGAAACTGCGGCGGAGCTCTTGTCGTTCAAGCATCCACACATAGCAAGCCCAAAGTTACAGATCCCTAATGCACAGACTCAAGCAGAAAGATGGTTTGATCAACCATATGATGAGCTGATAGCCTGCCATCTTAGAGCCGTGTGGGCCATAGCAAATAATGATTATGTTGAAGCCTATGCATCTCAAGCAtccctttttgcgttcacagataccactgtaaaaccgctgtacttattgacaacagacgcatttgtacaggCTTTTAATAGAGCATTTCAAACTCAAAAGGATGAAAATTGGTCATTGCCGGTGATGAATGCTGTCACATTGGACCTGCGCCAATTTGCTATCAAGGCTGATAAACAACTGACACATAATGGCAGAGGAAATCCAGGAGATACTTTAGAGAAAGCAGCAGAAGCTATTATGGGTTGCTTTAGAGTCTGTGCAAGTGATAGTCGTTCTTCGCTTGAAGTATCTAAGAAGTGGGGCATGCTTGCTCTTGTTATACAGTTATTCAAGATCTACTTCAAAATAAATAAGCTACACCTGTGTAAACCACTGATACGTGCTATCGAGAGTGCTCCAATCAAAGAACAGTTTAAAATAGGACATCTTGTTGCTTACAGATTTTTTGTAGGAAGAAAGTACATGTTTGATGGAGATTATAAATCAGCTAATGAATACTTAACATTTGCTTTTGAACACTGCCATCAAAGTTCTCCTAAAAACAAAAGAGCAGTATTGATTTACCTCATACCAGTGAAGATGCTTTTAGGTTTTATGCCCAGCTTGGGAGTCTTACAGAAATACAAATTAGCACAATTCATTGATATTGTGAAGTCGGTCAGGACTGGAAATCTACTTCTTTTCAATGAAACTTTAGAAAAACAACAGACATTTTTTATCCAGTGTGGAATTTATCTGATCTTAGAAAAACTCAAGATTATCACATACAGAAACTTATTCAAGAAAGTGTCACTTTTGTTGAAAACTCACCAACTACCATTAGATGCATATGTGACTGCTCTCCAAAGCATGCAGGTCGAGGATATAGACATAATTGAGATTCAGTGCATTGTAGCAAACTTAATATACATGGGTTACATCAAAGGTTACATATCACATCAGCACCAAAAGTTGGTCGTCAGTAAACAAAATGCTTTCCCTGCTTTATCAACATTCCTGAGTGCCGGCTTCAAAGGAAACTTTCTAGATATTGAGCAAAATTCGCTGTTTTTTCAACAGTTCTGGGAAGTTATTTCCGACGAACATGGTATCGACCCCACTGGCACATACCACGGAGACTCCGATCTCCAATTGGAAAGAATCAACGTATATTATAACGAAGCAACCGGCGGTAAATATGTCCCAAGAGCTGTATTAGTGGATTTGGAACCCGGTACAATGGACTCTGTTCGATCGGGACCATTTGGACAAATCTTTCGACCAGACAACTTTGTATTCGGACAAAGTGGTGCTGGAAATAACTGGGCTAAGGGACATTACACAGAAGGTGCCGAGTTAGTCGATTCAGTTCTCGATGTCGTCCGAAAGGAAGCTGAGAGTTGCGATTGTCTACAAGGATTTCAGCTTACACACTCTCTTGGCGGAGGAACCGGCTCTGGCATGGGAACACTTATGATCTCAAAGATCCGCGAAGAATACCCAGATCGTATCATGAACACATTCAGCGTCGTCCCTTCGCCTAAAGTATCAGACACCGTCGTCGAACCATACAACGCCACACTCTCAGTACATCAGCTCGTAGAAAACACCGATGAAACATACTGTATCGATAACGAAGCTTTGTACGATATTTGTTTCCGAACCCTTAAACTCACCACCCCAACATACGGCGATTTGAACCATCTTGTATCTGCTACCATGAGCGGGGTCACTACCTGTCTTCGATTCCCTGGGCAGCTTAATGCTGATTTGAGAAAACTAGCTGTCAACATGGTACCATTCCCACGTCTTCATTTCTTCATGCCTGGCTTTGCTCCTCTGACCAGCCGTGGCTCTCAGCAGTACCGTGCTCTGACTGTCCCCGAGCTCACACAACAGATGTTTGATGCCAAGAACATGATGGCTGCTTGTGATCCTCGACATGGACGCTACCTCACAGTCGCTTGCATGTTCCGTGGCCGTATGTCCATGAAAGAGGTCGATGAACAGATGCTTAATGTCCAAAACAAGAACAGTTCCTACTTTGTTGAATGGATCCCCAATAACGTCAAGACAGCTGTCTGTGACATACCACCCAGAGGTCTAAAAATGTCTGCCACATTCATTGGTAACAGCACTGCTATCCAAGAACTCTTCAAGAGAATCAGCGAGCAATTCACTGCTATGTTCAGGCGAAAGGCTTTCCTTCATTGGTACACTGGTGAGGGTATGGACGAGATGGAATTCACTGAGGCTGAGTCCAACATGAATGATTTGGTGTCTGAATACCAACAGTACCAGGATGCCACCGCTgaggaagagggagaatttgacgaggaagaggaaggcgaagaggaGGCTGCATAA

Transcript

alvinactis_v1_g10737

Protein

Uniprot

Uniprot term	Description
P11833	Tubulin beta chain OS=Paracentrotus lividus OX=7656 PE=2 SV=1
Q3MHM5	Tubulin beta-4B chain OS=Bos taurus OX=9913 GN=TUBB4B PE=1 SV=1
P68371	Tubulin beta-4B chain OS=Homo sapiens OX=9606 GN=TUBB4B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07375	TUBB; tubulin beta	-	Exosome	ko04147	deepkoala