Gene detail

Detailed information of alvinactis_v1_g10890 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:13532072...13565455
NR annotation: XP_020896521.1, proline-, glutamic acid- and leucine-rich protein 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g10890

GGTTGTAGTAAAGAATGGATTGCAAAGCTGAACAGCTTGTTGAATACAAACTCAGATAGATGGTTGGGTATCAGCCTACTTGGGACAACTCTGCAGCAATGTGATACAAAAGTCTTTACTGCTAATTGTATGTCATGGATGAAGACTGTACAGCAAATCTTAGAGTTTCCAATCTCTTCATTGAGTTTGATTCAATGTTCTGTAAAGGTGCTGGATGATCTCATGAGATACACAATACAGTTTCCTGATCTAATGAGAAATCTTGCAAACTCAACTGTTCCATCAATAATTTCAGCACTTTTATCCCTGACAGATAGGGATATTATTTGCTCTTTGCGTGGTATTTGTACTTGTTTGACATATTTCCCTGGACCTGCATCAACGTTCAAGTCCCAAATAGAAAAGTGTGTAACATCTTATCTAGACACTTCCAATGCAGACATAAGAAAGCATTGTGCGCAGTGTTTTGCTCTCATTGCTGGGTATGGCAGTAATGTATCAGATGACAAGCAAAGAAAGAACTGGAATATACAGTGGAGTAGAATCCTTGGCACAATTCATGCCATTCTAGATAATTTACATGCATATGATGACATCAAAGTTAATAATGAAACCAACGAAATGCTGCCAGTTGGAGTTATCGCGAATGAAGAGCCTAAGAAAACTAACACTTGTACTGCTAGGCTGAGGTCTTTAATACAATATCTAGAGGCTATGATAAGAGAAGGGACAAGAAAAGTCAGCATGGTACCAGTAGAGGATACAATCACACTTCTTGAAAGGTTACTGGCAGTCAATGACAATATGTTGAGACAAAGTGTATCATTGGATGTAGTTCTCCTGAAGAGTTGTTTGCCTCTCATTCATTTAAGTGCAGTGGAGCTGTTATGTTCTTTGATACAAAGGTGTGGCAGTCTATTATTACCAGATGCTGGTAGGATAGCAAGTATGCTGGTTAAGGAATTGTCATGGACATCAGATATACAGTCTTCACAACATGGCTCATTCAAACCATATAGTAAGCTTCGTTGTGCTGTGTATAACTGCTTTGTTCACTGGGGACATCTCAACGCTAGTTGCCATCCAAACATTATAAAAGATGTGATTCTCAACATCCTGAAAGAGATCAAAGTTTCATCAAACAACCAAACAAAGCTCAAAGCTCCTTTGACAGATCTTAAACAACATAAATCCAAGGGAAAGAAAAGAAAACTGCAAGAGATGGAACAGTTAAGCACAAACCACAAAAAGACTGATCCACTTGATAATGCAATAATCTGTCACACGGCATTGTCTGCTCTTTTTGGTGTTTTAATAAATTGTGGAGACTATATGGCTAAAGAAATATTCCAGGAAGTACAGATGACTTTGTTGGACCTTGTGAATCAGTTTCAATCAAGTTCACCTGGAACCTTACCACAACCTTATGGTAGTGCAGACTGCCGCAAGGAAGTATACCACTGTCTGCATGCATGTATCTTGGCACGCCCCTCTGGTGCCCCTAGTGCTATCAATTGTGTTATAAGATGCTTCAAACAAGGCTTGCAAGACACTCACTTCAAGGTGTCCAGTTATTGCAGAGAAGCGTTGACAGTTGTCACTGCTTTAATTCACCCTGTAGTACCCTCCCTTGATATTGCAGTACAGCCTATGATTTACTCCAACCAGACAATTCCAGGAACCTCACATTCAAACCACAATGGCCAGTTAGAGGATACAAACTCCTTATATTCCAAAGAAAATGAATCATCATTTCCAGGAATGTCAATTGATGCACCAGATGTACAATCTAGCTGTGAGAATTCATCTCATAATGAAAAGCATACGAAAACTGAAGAGAAAAGTCATACTATTGCAGCTGGACAAAGTACTGAACAAAGTACAAGTAATGCTTTAAACAAGGATACCAGGAATTGTATGAGCGCAGCAAGTCTAGAAAGTGAAGAAGACTGTCAATTTATACATAAAACAAGTGACAGTGATCTTCCAATACCTGAATTTCAACCAACAGACATCAACACAAACGAGAACTCTAGCAGTGGTAACACTAATGTTAGCGGTTGTAGTTTTAGTGAGAAACAATCAGagtcgctaaagactgttcaaccttcagtatgtgatgaccaggatatacgaactgtacctatcaagaagtcgctaaagactgttcagccttcagtatgtgatgaccaggatataccaactgtacctgtcaagaagCATAAACCTGATGGCTATGAATGTGATACTGTTGATGGCAATGGAGGTAGTGGTTTGGAATTAGCTGATGTTGCAAGTAATAATAACAAACAAGATACCAATGATACTCAGGATATTGATGACGTGAATGAGATGCTTGCATCATTTGTCAATTCCTCTCCTGATTCAGAAAGTGATGGATGA

Transcript

alvinactis_v1_g10890

Protein

Uniprot

Uniprot term	Description
Q1W1Y5	Proline-, glutamic acid- and leucine-rich protein 1 OS=Macaca mulatta OX=9544 GN=PELP1 PE=2 SV=1
Q8IZL8	Proline-, glutamic acid- and leucine-rich protein 1 OS=Homo sapiens OX=9606 GN=PELP1 PE=1 SV=2
Q9DBD5	Proline-, glutamic acid- and leucine-rich protein 1 OS=Mus musculus OX=10090 GN=Pelp1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan
PF08166	PELP1_HEAT	PELP1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012583	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan
IPR012980	Domain	PELP1, middle domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16913	PELP1, MNAR; proline-, glutamic acid- and leucine-rich protein 1	-	Ribosome biogenesis	ko03009	deepkoala