Gene detail

Detailed information of alvinactis_v1_g11116 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:18426865...18459604
NR annotation: XP_020912849.1, uncharacterized protein LOC110250585 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g11116

atgcaaaaagatgttgacaagcaagctgtcaacagtactcacgcaacagactttccacaaagattcagatgcgaagaaaAACACGAGGATGTGGTGGACAAATGGGTGGAGAGCGACATCAACAAAGTCAAACTCTTACGTCCTTCTGACTTGAAAGGACTTACAAAAACCAGCTTGGAAAAATCCATGGAGTACAGCTATAGGCTTCGACAACGAGCTAAGAATGAATGGTTAGAAGCAGACAATATTAAAACGATTGCAACGTCAATGGAAGAGTTTGTTACTTGTCTGATAGAACCTCTCAAGTACAACAGAGCCAAGGCTGACATATTTGCAGACGAGATTGATCGTGTGGCTGGAACTGCTTTACTGTTTGAACAGAAAAAGTTTCTTTGTCATATGGTGGTCTATGAACTACTAATGAGGCGTTGGTCTGGAGTCTTTTATGAATTGAGATCAAGTTCACGTATCACAGCAGGATGGTTGAAATGGATGTTACTAAACATTTGGGCTGTCTGTGATATGGCTCTTTTCCCTCTAAACTTTTCCCTGTTGTATTTATTACACATGATTGTCAAATGGTGGAAAGAAAGACAAGAATATCACGTCATATTCCTCTTGAACGAATCTAGACAACACACTCTATCTGGCACCTTTTCCACGATGCAAGATTTATCTATGGGTATCATGAACGCATTTATACCTGTAAGGTGTGCCTATGCTTGTATCATACGCAAGAATGACGAGCTGCTCACCAAGCAATTTTCAAGCAACCGCGATGTCAGTTACCGTGCGTTGCAAGGCAACATGTCTGGTATGGAAATGGACAACATCAGCAGCGCCGACACTCAAGTCGATATATTATGTTTATCTTTAACAAAAGCAAAGGAGCTCTTTGATGCTTGTAATGAATGCAGACGTAAGGTTTTAGTTGTGATAAGCGATGAAACCGTATCTTCCTGTGCGATTGAGCTACCGACTGGAGTCAAAGTAATTGCTGTTGGGTTTGGAGAGGACATTTCTATCGATGATCTAAAACATCTGACAAACAACGAAGAAAATATAATTCTACATCACGACGATAGAAAGATGGCCAAAGTTTGTCAAAAAATATCCACGTGTATATATGAAAGAGACATCTATGACCGATATCGAGAGTATTTTACCATGCCTTTCTTCATTTTCCTCCGCAATACGTTGGGCTACTTTATCCTACTTGCCCTTCATTTTGAGATGTGTCTTCTGCCATCAACACTGCAATTTATTGCAACTGAGTGGGTTATCTTACTTTTCTTTGTTGGGAGATTCACAATGGAGATTGACCGAATTGTTCAATTAAGGAGAAAACTAAGAAACACTGGATTTAAAGCGACATCAAAGTATTTGGGTGACCCATGGAACCGGATGGATGTCTTGTCGTTGTTAATCTACGTTGTGTTACTGGTTGTTAGAATACTCGCTTGGTCCTTCCATGGTTCTGTGCAAAAGAATCGATTACTTGCAATGTCTGGATACATGTATGGTCTCAATGCCATGGTTATTACACTCAGAGTGTTCGGTCATATAATGGAAACGAATGCATTCTTTGGAACCATACAGATTGCCTTGTTTCAAATTATTGGCTCTTGCATTGCCATCTTTGGGCAGTTTTTGGTAGCGCTCATAGCGTTCTCTCTCGCTATAACTAAGGTCTATGTAACTGAGATGTCCTACATCACAGTGTCCAATACAACGTCGAAACATGGGTTATGTGAAGGTCATGGAGGCATCGCCTGCTGGTGGAGTCTTAATAAGTATCTAATATGGTCTGTTCTTGGTTACGGTGGTCCTGAACCTCTCCAATCAGCAGATGACACATCCAACGCCATTGTTCTAACCTTGTACGCGTTATTCCTGATACTGGCTGTTGTAATGCTGATGAACATGATGATAGCACTCTTATCAAACACGTATCAACATGTTGAGGACAGTGCCTACTACGAGTGGTCGTACAGGAAAACCGCTACCATAGTAACCTACTTAACACATCACCCGGTCCCAGTACCATTCAATATCGTGTCGTTGCCATTCGTACTCGCTCGCTATATATATAGACAACTCAGTAAATCTACGCAAACTGTTTCTAACTCCGGTGGAGAGCGATTCAAACGCCTGGTAACTTACCTAGAGAATAGGTATATCTCAGTGAATGGCAACAAATTCGCGCATGCGCTTACAGATAACTCCGCTAGCCTTACTGTCAGTGATGACCAAGGAAACTCGCTGAAAAACTTGATTAAACAAACAGAAGGCAATGGCCAACTCATTGGTCGAATTATTGAGAGAGAATTTAAGCAAGATCGGGAGGAGCAATATCAGCTTAAATTGAACGGTGCACAGGCTTGGCACACCAAAGGCATATCAGTCATGGGTCAGCGGTTATTATATAGTGACTGTTTTTGTAACGATTGTACCAGTCAACCATCCAGTGAACATGGTGCAAGATATAAGAATCGTGTGTCCATAGAATGGCCTGGGTTTGAGATACTTGTTCAAAGTTCAAAAGATTGTTCTGTTGCATTTGGTGTGGTCGATGAAGGGTTTAGTCTTCATAAGATACCTGGAGCTGAACGAAACACTGTAGGATGTAAATTAGGGCCTGGCAGCAGTACATTATTGTACGATGGTAATTACATCAATATCAAGAAAGTAGcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaggaagacaagcagacatgcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagataagcagacaagcagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacaagcagacatgtacaagcagacatgcagacatgcagacaagcagacaagGATATCCCGTCGTCTATATTCCAAGATACGAATATAG

Transcript

alvinactis_v1_g11116

Protein

Uniprot

Uniprot term	Description
Q9UL62	Short transient receptor potential channel 5 OS=Homo sapiens OX=9606 GN=TRPC5 PE=1 SV=1
Q9MYV9	Short transient receptor potential channel 5 OS=Bos taurus OX=9913 GN=TRPC5 PE=2 SV=2
O62852	Short transient receptor potential channel 5 OS=Oryctolagus cuniculus OX=9986 GN=TRPC5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002153	Family	Transient receptor potential channel, canonical	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005262	Molecular Function	calcium channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0015279	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034703	Cellular Component	cation channel complex	Interproscan
GO:0051480	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0070588	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070679	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04967	TRPC4; transient receptor potential cation channel subfamily C member 4	-	Ion channels	ko04040	deepkoala