Genomic Location: chr_1:19381635...19403546
NR annotation: XP_020912507.1, LOW QUALITY PROTEIN: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g1137 |
| Transcript |
| alvinactis_v1_g1137 |
| Protein |
| alvinactis_v1_g1137 |
| UniProt accession | Description |
|---|---|
| P15690 | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus OX=9913 GN=NDUFS1 PE=1 SV=1 |
| P28331 | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFS1 PE=1 SV=3 |
| P0CB68 | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus OX=9600 GN=NDUFS1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005696 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13510 all species → | Fer2_4 | 2Fe-2S iron-sulfur cluster binding domain | Domain | Interproscan |
| PF09326 all species → | NADH_dhqG_C | NADH-ubiquinone oxidoreductase subunit G, C-terminal | Family | Interproscan |
| PF10588 all species → | NADH-G_4Fe-4S_3 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | Domain | Interproscan |
| PF00384 all species → | Molybdopterin | Molybdopterin oxidoreductase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001041 all species → | Domain | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Interproscan |
| IPR000283 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site | Interproscan |
| IPR019574 all species → | Domain | NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding | Interproscan |
| IPR010228 all species → | Family | NADH:ubiquinone oxidoreductase, subunit G | Interproscan |
| IPR015405 all species → | Domain | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like | Interproscan |
| IPR036010 all species → | Homologous_superfamily | 2Fe-2S ferredoxin-like superfamily | Interproscan |
| IPR006963 all species → | Domain | Molybdopterin oxidoreductase, 4Fe-4S domain | Interproscan |
| IPR006656 all species → | Domain | Molybdopterin oxidoreductase | Interproscan |
| IPR050123 all species → | Family | Prokaryotic molybdopterin-containing oxidoreductase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43105 all species → | RESPIRATORY NITRATE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0008137 all species → | Molecular Function | NADH dehydrogenase (ubiquinone) activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0042773 all species → | Biological Process | ATP synthesis coupled electron transport | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016651 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H | Interproscan |
| GO:0003954 all species → | Molecular Function | NADH dehydrogenase activity | Interproscan |
| GO:0045272 all species → | Cellular Component | obsolete plasma membrane respiratory chain complex I | Interproscan |
| GO:0045333 all species → | Biological Process | cellular respiration | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03934 | NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1 | EC:7.1.1.2 | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
