Gene detail

Detailed information of alvinactis_v1_g11635 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_5:25750518...25752554
NR annotation: KXJ06651.1, Retrovirus-related Pol polyprotein from transposon 412, partial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g11635

atggatgtcctggatctcgatcagtcatttctgacagataccgacggaaagaaagtggatacaaccgagttacgccaagcacagcaaaccgacattagcatagccaagaccctagaatacaagagagagggtcggagaccgacaaggagacagttgcgacgtgaagacccacaaacaaggtcattactacgagaatggagaaaactgaaagttggtgaggatggcatactaagacgtcgaaacaagtctggcctacagcttgttgtaccattcaagctacgtagtctagtgtacaaggagttacatcaggaaatgggacacctcggcgcagatagagtgaatcagttggctagagaaagattattttggcctcgcatgcaacgggatatcacccattacgttacgaaagtttctccctgcctcaaacaacgtcgtcctaacttgtctacgcgagcaccaatgcagaacatcaagacttctactccgtttgaactaatatcgattggctttgttcacctagaacgtagttctgggggatacgaatatattctagtggtagtagaccattttaccagatttgcacaggcgtatcctacaaggaataaatccgcagttactgtcgctgacaagatattcaacgacctaattccacgttttgggttcccagcacgaattctacatgaccaaggcaaggaattcgaaaacaacttgtttaaacgtctagagaaactgtgtggaataacacatgcaagaaccactccgtacaacccacaagacaacggacaagttgaggggtttaatcagacgttgctaggaatgcttcgcaccctaccagaggaaaaaaaaggtaaatggaaagactatgtgaataaacttgtccatgcctacaactgtactccaaatgacgcaacccgattcgccccattctacctgctgtacggacgaactccaagattaccaatagatctgatattaggtacagataattcaactaacgtaacgaaccacagtgagtacgtcaagaaatggaaatctaccatgcaggaagcttacaatttagcaagggaaaattctaacttatccagtgacagaggaaagaaacattatgatcgaacgttgaacttcacaacacttcaagctggtgacagagttcttgtcagaaacgtgactccacgcggagggccgggaaagcttcgttcctactgggaggaaaaggtagtggtcaagcaaagaggggagggaccggtgtatgaagtaagacgtgaagaccaaaatggaccggtacgcacacttcatcggaatatactcttcccgtgtgacttcttgTCCCTTGCAGACGAGGGACCTCTAAACGAACAACCCGTGAATGAACAACCGGTAAGGCCACGACGTGTGAGAAGACAGCCACAGACAAGACCACAATCTGACGAACAGTCTGATGACAGTAGTGAAAGTGAAAGTGAAGAAGAGCTTGTACTAGTGACAACTCAACCAAGTGTACGACACAGAGAGGTACATCAAGAAGACATAGTTGATGAGGTGACTAGCAGTGCAAGTGACGGGGACGTAGCAAATGGTCTCCAAGGCGCTGAGAACCCAGTCGAAGAGACTAACGATGTGCAAGAAGCCAATAATGATGGACTACACTATGAGTTAGACGAGCACGAGCCAACGGAACTGCAACAACCACCAGAAGATGAGTCAGCGCATTGTCGTCCACAACGTGGGCGTCAACCACCGATAAGACTAGGATACGACGAATGCGGTCGTCAGGTATTAGTACAGACAGCGAATGCTACGCAACAGGTAAACCCGTGCTACTGGATACCACCATATCAGAACAACTGTAACATTCCCATGTCATATCCATACCAACAACAACAGATGTCAGTTCCAGTCTCGATAGGTGCAGTACAGAACTATGGTCAGCATATCTATGCTCCTTCTACTCAGCCGTGGATCAACAGTGCATGGATGTACCACAACTACTTACGACCTTATGTACCGATGAATGGACAAAGATGGAACTACGCATGA

Transcript

alvinactis_v1_g11635

Protein

Uniprot

Uniprot term	Description
P03360	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2
P10272	Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 SV=2
P21414	Gag-Pol polyprotein OS=Gibbon ape leukemia virus OX=11840 GN=pol PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09171	NFIX; nuclear factor I/X	-	Transcription factors	ko03000	deepkoala