Gene detail

Detailed information of alvinactis_v1_g1237 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:21023687...21030577
NR annotation: XP_020895849.1, catenin beta [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g1237

ATGGATCATCAGGTGGCGATGCAAAGGGGAGAGGTGAACAAGAACATGGAGACTGCAATGTGGCATCAGCAATATCATGATTCAGGCATCATGTCAGGTGCAACGACCACAGCACACTCCATGAAAGGTGATGAAGATGACGACTACATGAAGACTACCCACATGAGCTTTGAATGGGAGCAAAGCTTTACAGACCATGAAATGCAGGCTATGAATGAGCAGTTTGTCTCTACCAGAAGTCAACGCATTCGTCAAGCCATGTTTCCCGAGACTCTGGAAGACGGCATGCAAATTCCATCAACCCAGTTTGATACAACCTCATCTACAGCAGTTCAGCGATTAGCTGAACCTTCACTGATGTTAAAGCAGGCTGTCGTTAATCTAATCAACTACCAGGATGATGCCGATCTGGCAACACGAGCCATTCCAGAATTGACAAAGCTTCTGAATGACGAAGATCAGGTGGTTGTTGGCCAGGCAGCAATGATGGTTCATCAGCTGTCCAGGAAAGATGCCAGTCGCCATGCTATCATGAACTCACCACAGATGGTGGCAGCGTTGGTCAGGGCACTGAACAATGCTACTGACGTGGAGACCACTAGATGTGCTGCTGGCACTCTACACAATCTGTCACATCACAGACAAGGTCTTCTGTCCATCTTCAAGTCTGGTGGCATCCCTGCACTTGTGAAGTTACTTGGATCACAGGTTGAAGCTGTGGTGTTCTATGCCATCACAACACTTCATAATCTTCTACTTCACCAAGAAGGGGCCAAGATGGCCGTTCGTCTTGCTGGTGGCTTGCAAAAAATGGTCGCTCTTCTGGGTCGTACTAATGTCAAGTTTTTGGCCATAGTGACAGACTGTCTTCACGTACTGGCTTATGGCAACCAGGAAAGCAAGCTAATCATCCTGGCCTCTGGTGGACCTGCTGAGTTGGTTCGCATCATGAAGAGCTACACTTACGAGAAGCTCCTGTTTACAACCAGTCGTGTCTTGAAAGTCTTATCAGTGGACACCGACAACAAGATGGCTATTGTAGAGGCTGGTGGAATGCAAGCCCTTGCCATGCATCTTGGCCACCAGAGTAATCGTCTGGTCCAAAACTGCCTCTGGACCCTCCGTAACTTATCAGATGCAGCAACTAAGGAAGACGGCCTGGACAATCTACTGCAAATGCTCGTTCAGCTACTGTCGTCTAATGATACACAGGTGGTAACATGTGCATCGGGGATTCTCTCCAATTTGACGTGCAACAATCCACGCAACAAACAGCTCGTGTGCAGGTTTGGAGGTATCGAGGCTCTCGTGCGCACATGTCTTCAAGCAGGAGATAGAGAGGAGATCACAGAGCCTGCAGTGTGTGCTCTTCGCCATTTGACAAGCAGACACGCGGACGCAGAGGCAGCTCAGAACGCTGTGCGTGTGCACTATGGGCTACCAGTGCTCGTAAAGTTGCTTCACCCTCCTTCACGCTGGCCTCTTATCAAGGCTGTGATTGGTCTTATTCGTAACCTCGCCCTTTGTCCAGCAAATCATACCCCCATAAGAGAACATGGTGGACTACCACGTCTCGTTCAACTACTGATGCGCGCGAATCAAGACATGCAGAGAAGACCAGGACAAACGGCTGTGATTGATGGAGTGAGAATGGACGACATCGTCGAGGGTACAGTCGGTGCTCTTCATATCTTGTCCAGAGAGGCGCACAATAGAGCTGTAATCAGAAGCCTTCACTGTATACCACTGTTTGTCCAGCTGTTGTACTCTCCCAACGAGAACATTCAACGAGTAGCGGCAGGCGTACTTTGCGAACTGGCCCAAGACAAAGAGGGAGCTGAAGCTATCGAAGCAGAAAGCGCCACGCAGCCGTTGACAGACCTGCTACATTCGAGGAATGAGGGCATCGCTGCGTACGCTGCGGCAGTTCTGTTCCGAATGTCAGAGGACAAATCCCAGGACTACAAGAAACGACTTTCTGTTGAATTGACCAGCTCGTTATTCAGAGAGGACGCGCCATGGCCAGAGCATATGGATGGTGAGTTCATGGAAAGCTATCAAATGCCTGGTGGCTACAATTACCCCCCTGAAAACATGGATTACACACACGCACCCATGGACTACCAGCAACAACACTACGATTACCACGGTGACCCCGGCATGCCCCACCCAGGTCAACAACACCCACCGCCAGGGGGTACATGGTATGACACCGACCTTTGA

Transcript

alvinactis_v1_g1237

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35224	Catenin beta OS=Urechis caupo OX=6431 PE=2 SV=1
P26233	Catenin beta-1 OS=Xenopus laevis OX=8355 GN=ctnnb1 PE=1 SV=1
Q0VCX4	Catenin beta-1 OS=Bos taurus OX=9913 GN=CTNNB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006928 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013284 all species →	Family	Beta-catenin	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45976 all species →	ARMADILLO SEGMENT POLARITY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0035257 all species →	Molecular Function	nuclear receptor binding	Interproscan
GO:0045294 all species →	Molecular Function	alpha-catenin binding	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0140297 all species →	Molecular Function	DNA-binding transcription factor binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02105	CTNNB1; catenin beta 1	-	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.