Gene detail

Detailed information of alvinactis_v1_g12530 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_6:7818522...7827092
NR annotation: XP_020917620.2, unhealthy ribosome biogenesis protein 2 homolog [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g12530

ATGTGGCGCAGAAACGCCCCTTTATTTTGGAAAATATTTGGGCTTCCTGTGAACCGTTGGTTCCACAGATTTGATTTTTTATCTCAACAGTACAAAAATGCTGAGAAAGTCAGCCAGGAGGCACTTGGGAGTTTTCTCCCACAGATGTTTAGTGAATTTTTAAAAGCTAGAAGATTCAACAAGTTTCATGGTCCATCATTTCTTGAATTTGAGTTCTTTAGAGTTTGTTTTGGGGTATCAGTAGCAGACGACAATGCTAATGGTCAAATACAATTCAAGTGGTTTAACAGCTTTATTGATCTTTTGATTAAAGCACCATCAAGCTTTATAGATTTCTTGTGTAGTTTAAAACTCACCAGAGCGAGGCTGTATACAAAGCTGTTCATGTATTTGTTTGTCAttttggccatttttatggactatatcccattgaaaatcatcatttcatcaccatcattaccatcagcaccgtacatcactaccatcatcgccatcatcaatcagcttagtacagaaccacataccagcaatattactttactgtcatcatctattttaagaacaccaccatgcatcatgtcatcaccatcattaccatcagcaccatacatcactgccatcattgtcatcatcaatcagctacagaaccacataccagcaatattactgtcatcatctacattagcagtaagaacaccaccctgcatcatgtcatcaccatcattaccattagcaccgtacatcactcccatcatggttatcatcaatcagctacagaaccacatacatgtaccagcaatattactgtcatcatctattttaagaacaccaccatgcattttcatcaccatcattaccattagcactgtacatcaatgccatcattgtcgtcatcaatcagctacagaaccacataccagtaatattactgtcatcatctacattagcaaacaccaccatgcattttcatcaccatcattaccatcagcactgtacatcactgccatcatggtcatcatcaatcagctacagaaccacatacaagcaatattactgtcatcatctacattagcagtaagaacaccaccctgcatcatgtcatcaccatcattaccattagcactgtacatcaatgccatcattgtcgtcatcaatcagctacagaaccacagcaatattactgtcatcatctattttaagaacaccaccatgcatcatgtcatcaccatcattaccatcagcaccatacatcactgccatcatggtcatcatcaatcagctacagaaccacatacatgtacaagcaatattactgtcatcatctacattagcaaacaccaccatgcattttcatcaccatcattaccattagcactgtacatcaatgccatcattgtcgtcatcaatcagctacagaaccacataccagtaatattactgtcatcatctacattagcagtaagaacgccaccatgcatcatgtcatcaccatcattaccattagcaccatacatcactgccatcatggtcatcatcaatcagctacagaaccacataccagcaatattactgtcatcatctattttaagaacaccaccatgcattttcatcaccatcattaccatcagcactcactgtacatcactgccatcattgtcatcatcaatcagctacagaaccacagcaatattactgtcatcatctattttaagaacaccaccatgcatcatgtcatcaccatcattaccatcagcaccatacatcactgccatcatggtcatcatcaatcagctacagaaccacatacatgtacaagcaatattactgtcatcatctacattagcagtaagaacaccaccctgcatcatgtcatcaccatcattaccattagcaccgtatatcactgccatcatggtcatcatcaatcagctacagaaccacataccagcaatattactgtcatcatctattttaagaacaccaccatgcattttcatcaccatcattaccatcagcactgtacatcactgccatcattgtcatcatcaatcagctacagaaccacatacaagcaatattactgtcatcgtctacattagcagtaagaacaccaccatatgcattgtgtcatcaccatcattaccattagcactgtacatcactgccatcattgtcatcatcaatcagctacagaaccacagcaatattactgtcatcatctatgttaagaacaccaccatgcatcatgtcatcaccatcattaccatcatcatcatcatgtgcatcaccaaacatcatcatcatcatctctacatgcatcaccatacattttcattatcattgccatctgcatacatcttcgtcTATGTTCCATACATGGTTGCTGAGGATATTCAACAAATACAAGAAGTCTCGTTACAAGAAAAGATAAAGAACGTTCTAGTGCCAGGAATCTACTGTCTCATCGATTCATGTGGAGAACACGAAATAGCTCTTCTTCATGCTGTACTTGACAAAGCATCCTGTGAACTCTTCACCACCTTAACCAATGAATACAACAAATTTTATGAATTCAAGGGGAATGCTTAA

Transcript

alvinactis_v1_g12530

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10441	Urb2	Urb2/Npa2 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018849	Domain	Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal	Interproscan
IPR052609	Family	Ribosome Biogenesis Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15682	UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01990	ABC-2.A; ABC-2 type transport system ATP-binding protein	-	Transporters	ko02000	deepkoala