Gene detail

Detailed information of alvinactis_v1_g13396 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_6:21059202...21077150
NR annotation: XP_031569530.1, leucine-rich repeat serine/threonine-protein kinase 2-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g13396

ATGTCTCGTACATACCAAGCCTGTGTAAATGGTGAACTGGAGCAAGTTCAACAATGTTTAGAAGACCCAAATACAAATAAGAAGGAACTCTTGTCAAGGCATTTCACCTGGGGAAAACTAACTTTACTTCACGCTGCAGCTTCCAATGGCCACGACAGAATAGTACAGCTATTGTTATACCACGGCGCACACGTCAACAGTATAACTGAGTGTGCAGGAAATTATACGCCATTGCACCTGGCAGCAGATGCAGGGAGAACAAAGTGCATTCAGTTGCTGTCGGATCATGATAAAGTGAATGTCATGGCAGAAGATGAATTTCATAGGACACCGTATAATCACGCTTGCGATTGCCACTCTAAACATAGTCATGTAGCCAAGATGATAAAGAGTGCAGAGATTATCCAAGCAGCAAAATGCAAAACTTCTGATATCTTGTGCAAATTGCTTGAAAAAGTCAAAAGAGACGAAGTGTCAAAGGACTGCTTTTCCCAAGCACTGCTTGCCTCCACCGCAAAACGTCACCCTTGCAGAAGCACAATCTCAGCCATTCTTTCTCACGTTGCACAACTGTCAAAGTCCAATTGTCTGGACATTGACATCATCAGCCCCATTAATTTGTGTTTTCTGTGCGAAGACTTCAATGCAGAGCTCACAGGAGTGCTGGTTTTATGCTGGATGGCTGTTAAGAATCAAACGAAGCAACTCAAGTATTTTCTAGGGATGAGAGATTGGTGGTTACACTCGCAGTCAAGTGATGGGACGTTTGATGTGCTGATTAATTCCCATCCACAGCGTATTCAGAGTATCAGGGAAGTCCTTCGAAAGAATAAATGCATTGACATCTCATTGGCAATCAACATGGCAATAGCCTGCAAGCATTATGGCGCAGCACAGTTGCTTTTAGCACATGGATCCCTAGCGGAAAACGAGGCAATGTACGAAGTGAACTGGAATAGCTTGGAGCTGACATGCCTGCACCACCAAGTACTAAATGGAATGTCCCATCGGAGACAGTTTTCAGCGAAGGTATTGCAATGGGGGAGTATCACCCGTATTGACCTCAGACGAAACAACCTCACCCAAGTCCCATCCATGATATTTCAGCTTCCGTTGCTGAGCAACCTTCTATTAAGCAATAACAAACTCAAAGATTTGCCGGAACTACGATGGGTTTCCGAATCCCTGAACCACCTTTATCTATCCCACAATGCTCTAAAAAGTTTACCCATGACTTTCTCGTGGTCTAACCTGAGGACCCTGAAGCTGGACGGCAATGGGTTTACAGAGGTTCCACGTTGCGTATGTGAACTGTCTGCTCTAGAAACCTTAAACATCCGTGGCAATCCAATATCTGCACTCCCTCTAAAGATGGGACTACTCTCAAAACTGAGCACATTTGAATTTGAGGAAAAAAAGATCGTGTATCCACAAGGTTGGAAGAGTTTTGGTGAAAGCACACAAGAGTTGATTAAATGGCTGAGATCATTGTTGCTGAAGACAAAGCCTTTTTCTACCATCAAGTTGTTGGTTATCGGATGGCAAGACAAGGGGAAGACAACATTGGTTCATAGGATAAGAAATGACTTACAATACAACCAAAATACCGACGATAGAGAGAGTACTAAAGGAGTAGAGGTCAGTGAAGTGGAAATGCAACCAAAGATCGGCCGTGTTTTGCCCATAGGGACAAAGATTACCTTCCAAGTGTGGGACTTTGCTGGTCAAAAAGAATTCCATCTCATGCACATGTGCTTTCTATCGTCTGTTGGTCTTTTTATTCTGGTTTGGAACCTGATTGATGACATGGCGGGTATAGAGGAACTAAAGACGTGGTTGAACAACATTTCATGTCAAACTTCGACGAAAACCACTGTCATTATTGTTGGCACTCACTTGGATTGCGTCAAAGTGAAGTACAACTCACGAAGCCAAGATGTGAAGAATTACATCGAACGTACAAGAACTCTCATCAGCCAAATGATTGACAGTCGCACCAaagacaatgtcctcgtggtcgatatagcagaggttagctgtaatccaagtgatactcaaggtatatcagaactgaaagagAAAATCTACAAAGCTGGTGGAGACATTGTTAAAGGCAAAGGTATTCGTGTGTTGGAGGAGCCTGTCCCGATGTCATTCCACCACTTGGTTGGTAAAATAGAGAGACTGCGAAATACAATGTGCAAAAACAAGGAAATCCCGATAGTCAATCGTGATCAGTTGAGGTCTTTGATGCGTGATATCTCAAGCACCAAAGACGAACATCTTGTCGAGCAAGAGTTTGATGAAGCAGTGGAGTTCCTCAAAGACAGAGGTATTATATTGTATTTCGATGACCCAAGTCAAGACCTACGCGATGTCTACTTCATTGATCCAAGATGGCTTTTCTCTCTGATGAATCAAGTCATCTGTACTAACAGCAACGATGATGGACTTGTGCGCAAAGACAAGCTTTTTTCCTCTGAACATGATGGAGAAGACGCGATTTTAACAGAGAATTCCAGAACTCAGGGAATTCGTTTGCTGAGTAGGTTTCAGTTGGTGCATGTTTTTGATGATGATTACCTTCTCATGCCTTCAAGGTTTCCAGAACGACGACCAGAGAATGTGGCGAACAATAAACCATTTTTCACGCCTCTTAGACGCATCTACCGCATGGAGTACATTCCGTACGGATTCTTCAGTCGACTACTCGCTCGGTTACTGCATTACATGGATGCAATGATTACTGAAGCGTATAGTAGTCACGACGTAACCTCGTCGGTACGATCTACAACAAGTGAAGGGtcatcaacatcggaaagtcctggatcatcacaaccaatgccatcaccaaagctaccaccatcatcgtcatcaacgatagcaccagcctcaccactattgttatcgtcgtcatcaacagcaataacaacaaaaacatcaccaacaacgtcatcaacaacatcaccatcatcaacagcaacatcaccatcgtcaacagcaacatcaccatcatcaacagcaacagcatcatcaccatcatcaacagcatcatcatcaccgtcaccgtcaccaacaacatcaccatcatcaacatcaccattatcaacatcaccatcatcaacaacaacagcagcatcaccatcatcaacaacatcatcatcatcatcaccgtcaccaacaacaacatcaccatcatcaacaacaacatcgccatcatcaacagcaacaacatcatcatcaccgtcaccaacaacaacatcaccatcatcaacatcaccatcatcaacagcaacagcagcatcaccatcatcaacagcaacagcatcatcatcaccgtcaccaacaacaacatcaccaacatcaacagcaacagcgtcatcatcaccgtcaccaacaacaacatcaccatcatcaacagcagcatcaccatcaccatcatcaacagcatcatcatcaccgtcaccaacaacaacaacaacatcaccaacatcaacagcaacagcatcatcatcaccgtcaccaacaacaacatcatcatcgtcaacagcaacgacagcaacaacatcaccgtcaccaacaacaacatcaccatcatcaacaataacatcatcaccgtcatcaacaacagaattgccatcatcaacaacaacagaatcatcatcaccgtcaccaacagcatcattatcgccgtcgtcaacaagagagttgacacgacaacaattatcatcaacagtaccaactctgccatcatcaaccacacaaacaccgacattatcgtcaccatcaacaacaccttcgccaccattggcatccacaacgatactaagaccaccaacaactgcatcaacattaaattcaacaccaccaacaccaccatcaacatcatctctaccatcgctgtcatCACTTTTGTCCCGTTCATTGCCACAAACGCTACAAAACAAAGATGCTGTGGATTTTCAGTTCTCGGTGTTCAATCTCAAACAAGACAACAAGCTACAATGGTGGAGTCGAGGACTGCAGCTGAACCTTCCTGAGATATCAGTTGTTGTTGAACTTTTAGAAGAAAACGATGTCTCTTCCATCGACATAAGCACCCTACCCTCAAGACCTGGGATGCAGATGCTTGTATCTATTGTTGAACATCTCGAAACACTTATTGCAGAATGGTTCCACGGAATGAAGGACGGCAAAGTTTCCAAGCTCATTCCCTGCATAGTTTGTGAGGAACTAAGCTTGAAAGACAAACACATATTCACAATGGAACAATGCCTGCATCTCTCTGACAATCACACCTTGTCACTGGAGTGCCCAATGCATAAGGAGCTGCCTGTACACCTATGTGATATTGCTCCTGATATCTCTCTGCAAGATGTTCAACAGAATCTGATATTCGAGTATCACCATCTCCATTACGATGAGACGAGTGTCATTAAAGAGGGCAGTTTTGGAAAGGTTTATCGTGCAGTTCTGAATAAACCAGACGGGCTGCAAACAGTAGCAGTAAAGCAGTACAAAGGAGACGACCTTACGTCCTTTATGGAACTCCGCAAAGAAATCAACATCTTGCAACGAATAAACCATCCTAACCTCATTGAAATGATTGGAGTGGCACGTAATCCACGATGCATGGTCTTTGAGCTTGCCCAGTATGGATCCTTGGATGGCATTCTATTTGATGCTCCAGCGACTGATATTCCACGCCTTGTAGTAGTGTCCATATCACAAGAGATAGTTGATGCACTCTCTAGGCTACACAGGGCAAAGATTATACACCGTGACTTGAAACCTGCTAACATCCTTGTCTTCTCGCTCAAAGAAGAAGACGCTGTGCACGTCAAGGTCGCTGATTTTGGAACTGCCAACTTCGTGGGGCCTTCCGGAATGAGGACTCCTGTGGGACGAACCCACATCAGAGCACCTGAGGTTTTAGAGTTTGCTTTAAAGGAAGAATATGGGGTAGAAGTCGACATTTATTCATTTGCAATTGTTTTGTACGGTTTAGTGTCAAGAACAAGGGCATTTGAAGATCTACCGTCGAATAAAATAAGGAGTGTTGTCTTACAGCAACAACGACCAATGTGGAGAAATGTGCAGGACACCTTGAGTAAGTTTGTGAACTTAACTCGACTCATGTGCGTCGCGTGGAACCAAGAATCAAGAGACAGACCCACAGCGGAAGAATGCAGTGTGCAGCTCCGAAATCCAGGATTTCAAGCCTTGATGTCAAAACTTGCATTCCCACCAGAGAGCACCGTGTATTTCATTCATTTGGTACCAAGTAAAGAGGAGCTGTGGGTAGTGTATCGAACCGATTCACTCACCTTCGTGTCTGTGTTTTCCAGCAAGTTGGACTCCAACACTAAACACAATTTCCTCATCTCAGCGACGGAGACTCTGACAGTTGAATGTGTCTGTGCTTCCCACGACAAAATCATCGTCCTACTGAGGAAAAACCAGTCTCAGCTGGGAATTTTCAAGATGTACACGCTGTTCGATGCGACTCTCCTTGTGACTATGAATTGCAGTTGTCTGCCGAGCACAGTTCATGCCATGACAATATCAGGCAGCCATATTTTTATTGCTTCCAACATCGGTTGCTTTGTTGGTTACATCGATGCCGTCGGTGAAACACTTGCACTACATCATCTGACACATGTCGCTTCACAAGCAATCGTTGCGTCGGCAGATAGACTTTGGTTGTCAAGCACAAGCAACGTTGAAGTATACTCCATCTTGAACGACTCCCAAATGCAGCCGCTGTATGACTGCCAACGCAGTCCCATTGAAGGAGTAACACAGTTGCATTGCTACAACGATATGGTTTGGGCGCTAAAGAAGGACGGCCTAGTGAAGCTGAATGGGCGACAAGAATCAGTCCCGTGCTGTTTCAGTGATAATGAAACACTCACTTGCTTCGTCCCCACGTACGATACCATTTGGCTGGGTTTTTCCACTGGTCATATCATGATCATAGAGTCAGAATCGGGTAAACTTTTAACTGTTTTTCGTCCGTATTCCGAAGGTGTTAACCACTTGCTGTTTTACCCCGACGCTAACCCACCCATGGTGTTCAGTTGTGGTAAGACACAGAGCCAGTGTTTGGGAGAAGGCAATGTCATATTGCCGCTAGCGATCGAGAGCTCAGAGATGGTCAAAGTGTCTGAAGCTCAACGGAAACTGTCTATGAAGACGTCATTTAAACTTCGTCCTGTAAACAAGTTCGAGGGGAACTGGGAAAGAGTTAATGATGATGGGTTCGGTGATGTGTTGATTGCCTGGCAGGCACTCACATGTGTGTCATGGCGACGTCTCCAAAATGGCATACAGTAA

Transcript

alvinactis_v1_g13396

Protein

alvinactis_v1_g13396

MSRTYQACVNGELEQVQQCLEDPNTNKKELLSRHFTWGKLTLLHAAASNGHDRIVQLLLYHGAHVNSITECAGNYTPLHLAADAGRTKCIQLLSDHDKVNVMAEDEFHRTPYNHACDCHSKHSHVAKMIKSAEIIQAAKCKTSDILCKLLEKVKRDEVSKDCFSQALLASTAKRHPCRSTISAILSHVAQLSKSNCLDIDIISPINLCFLCEDFNAELTGVLVLCWMAVKNQTKQLKYFLGMRDWWLHSQSSDGTFDVLINSHPQRIQSIREVLRKNKCIDISLAINMAIACKHYGAAQLLLAHGSLAENEAMYEVNWNSLELTCLHHQVLNGMSHRRQFSAKVLQWGSITRIDLRRNNLTQVPSMIFQLPLLSNLLLSNNKLKDLPELRWVSESLNHLYLSHNALKSLPMTFSWSNLRTLKLDGNGFTEVPRCVCELSALETLNIRGNPISALPLKMGLLSKLSTFEFEEKKIVYPQGWKSFGESTQELIKWLRSLLLKTKPFSTIKLLVIGWQDKGKTTLVHRIRNDLQYNQNTDDRESTKGVEVSEVEMQPKIGRVLPIGTKITFQVWDFAGQKEFHLMHMCFLSSVGLFILVWNLIDDMAGIEELKTWLNNISCQTSTKTTVIIVGTHLDCVKVKYNSRSQDVKNYIERTRTLISQMIDSRTKDNVLVVDIAEVSCNPSDTQGISELKEKIYKAGGDIVKGKGIRVLEEPVPMSFHHLVGKIERLRNTMCKNKEIPIVNRDQLRSLMRDISSTKDEHLVEQEFDEAVEFLKDRGIILYFDDPSQDLRDVYFIDPRWLFSLMNQVICTNSNDDGLVRKDKLFSSEHDGEDAILTENSRTQGIRLLSRFQLVHVFDDDYLLMPSRFPERRPENVANNKPFFTPLRRIYRMEYIPYGFFSRLLARLLHYMDAMITEAYSSHDVTSSVRSTTSEGSSTSESPGSSQPMPSPKLPPSSSSTIAPASPLLLSSSSTAITTKTSPTTSSTTSPSSTATSPSSTATSPSSTATASSPSSTASSSPSPSPTTSPSSTSPLSTSPSSTTTAASPSSTTSSSSSPSPTTTSPSSTTTSPSSTATTSSSPSPTTTSPSSTSPSSTATAASPSSTATASSSPSPTTTSPTSTATASSSPSPTTTSPSSTAASPSPSSTASSSPSPTTTTTSPTSTATASSSPSPTTTSSSSTATTATTSPSPTTTSPSSTITSSPSSTTELPSSTTTESSSPSPTASLSPSSTRELTRQQLSSTVPTLPSSTTQTPTLSSPSTTPSPPLASTTILRPPTTASTLNSTPPTPPSTSSLPSLSSLLSRSLPQTLQNKDAVDFQFSVFNLKQDNKLQWWSRGLQLNLPEISVVVELLEENDVSSIDISTLPSRPGMQMLVSIVEHLETLIAEWFHGMKDGKVSKLIPCIVCEELSLKDKHIFTMEQCLHLSDNHTLSLECPMHKELPVHLCDIAPDISLQDVQQNLIFEYHHLHYDETSVIKEGSFGKVYRAVLNKPDGLQTVAVKQYKGDDLTSFMELRKEINILQRINHPNLIEMIGVARNPRCMVFELAQYGSLDGILFDAPATDIPRLVVVSISQEIVDALSRLHRAKIIHRDLKPANILVFSLKEEDAVHVKVADFGTANFVGPSGMRTPVGRTHIRAPEVLEFALKEEYGVEVDIYSFAIVLYGLVSRTRAFEDLPSNKIRSVVLQQQRPMWRNVQDTLSKFVNLTRLMCVAWNQESRDRPTAEECSVQLRNPGFQALMSKLAFPPESTVYFIHLVPSKEELWVVYRTDSLTFVSVFSSKLDSNTKHNFLISATETLTVECVCASHDKIIVLLRKNQSQLGIFKMYTLFDATLLVTMNCSCLPSTVHAMTISGSHIFIASNIGCFVGYIDAVGETLALHHLTHVASQAIVASADRLWLSSTSNVEVYSILNDSQMQPLYDCQRSPIEGVTQLHCYNDMVWALKKDGLVKLNGRQESVPCCFSDNETLTCFVPTYDTIWLGFSTGHIMIIESESGKLLTVFRPYSEGVNHLLFYPDANPPMVFSCGKTQSQCLGEGNVILPLAIESSEMVKVSEAQRKLSMKTSFKLRPVNKFEGNWERVNDDGFGDVLIAWQALTCVSWRRLQNGIQ*

Uniprot

Uniprot term	Description
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q38SD2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=LRRK1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR053215	Family	TKL Ser/Thr protein kinase	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45756	PALMITOYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan