Gene detail

Detailed information of alvinactis_v1_g1399 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:23713211...23728532
NR annotation: XP_020916900.1, kelch repeat-containing protein 2 isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g1399

ATGGGTCAAGACCTCTCTAAGCACACCAAAGTGTCTGGAAGCTATGATAGTCTGCAAATCAACAAACTCAATAGTCTTCAATATAACAAAACTACTTCAAAATTTACAGAAAGAGAATTCAAGAGCTTGGTCAAGTTATTCTATAATCTAGCAGCTTTGTCCCCACAACATAACTACATTAGTAAAACAACATTTGAACACTACTTCCCTTTGGGAGGAATATTAGCAAAGAGGTTATTTGTTGCTTTTGATACAGACAAAAATGGACTTATTGATCTGCAAGAATTCCTAGATGGTATGGCATTATGTCTTCAAGGTTCAATAGATGAGAAATACAAAATAGCTTTTGAAATGTTTGACCTCGATGGATCAAATGGAGTGTCACCTTGGGAATTACATGCGGTACTAAAATCTGTCTTGGGCACAACGTCAAGGTTGATTGAACAACGTCATAATCGACACGAGTTAACTGAAGTCGACCTGGATTACTTAGCTCATCGTATTGTACAGGACGCATTTAAACAGCAAGCAGCTGATCTAAACGGGGACAACAAGATGACGTTAAAGGTGTTCAAGTCGTGGATGGAGAAACACCCGTTTGTTTTAGACTCCATTTTTGGACAAGCATGTTTGAAGGACAAAAATTTACAGTATTCACGTTTTGGAAATGAAGAGCGTCTGGGTGTCCCTGCAGAAAACGGCTTGTCTTCAGTGAAGAAGCAAACGTGGGTAGATTGTGCATCTGAAGATGAAATATCCGCTAAAACTAACCCTTTCAATGGCAGCTACGCTAAAGCAGACTATCTGTGGAGCCCTGTGTTTGCCAAAACGAATTCCAAGCCATCCAAACGATGTAAACTTGCTGCATGTCTGGTATATGACTCAATCTACACGtacggtgggcgtggtatttgtacgtcactcaaagatatgtggagatacgatatagGTGAAAACACGTGGTTTCCTATAGAAGAACAGGGCGACAATCGACCTTCATATCTCCAGGAACACACCATGTTACCTTATAAAGATAGTTTAGTTGTTTTTGGTGGCGAGTTCACCTCTTTGAGTGAGACTCCCTTGTGGCTTTTTAATTTACATACTTCGACATGGTCCAAGCCTTCGGGCAAGCGAAAGGGCCCTGTAAACCGTCGTGGTCACACGGCCGTCATATCGGGCGATGTAATGTATGTTTTTGGTGGGTATATCGACCTCAGAGGAGCTTCAAGAGAGCTATGGAAATATGAATTTTCTACAAACACTTGGACGAGAGAAAAGAGTCAATCGCGTGAGTGGCCGAGCCCGAGGTATTCCCATTCAGCGGCTGTGTTCGACAAAAGTATGGTAATATTTGGCGGATTGGAAGAAATGCAGTGTAAAAATGATATGTGGCTGTGGAATATGGCGTCCTGTAAATGGAACAAAATAAAAGGAAAAAACTCCCCACCAGCACTGTTTGGTCATTCTGCTGCCAAGGTTGGTGATGGAATGTTAGTGTTTGGTGGAGAATCGACTGACGGGACTCTATTCAATACTTTGTGGAGATTTAACTTTGACGCACGAGCCTGGAGCACCGTAACACCAAAAGGCATGATATCACCGCCAGCACGAAGCTACCACTCTCTCGTCCGGATTCCTAATTTCCTTTTCACATCACGGCGACCAACTTCTTCACATTCGGCCCCTCCTTGCACCCCGGGGTACGATCGCGAACTACCGAGACTAGAGGAAGAAAACGTGACCTCCGACGTGCGAAATCCAGCAAGGCTGAGTTCCGTGGTGTCCATGGGGTCACTGGACTCGACGGCTTTGTTATCGCAAAATGAGGATGAAGTAATGAAGATTAAACTTAATCCCCTGGGTTCGTTAGACTCGCTAATTACGAACAAAGTCTTACGTGAAACTGAGAATATGTCAATGACAAATCATGAAAGAACTTGTTTTAGCGAAGAGACTTTGGTGAATATTAGTACAGTGGAAAGCAACCAACACAAGATagctgctaaaccagctgctaaaccagctgcaaacTCAATTGGACGTTTACAACCCACTTCCGGTAGCCAGCGCGTGGCCGCTCTACGCCTGCAACTAAAACCACAGAGTTCCCACTGTTTGTCACCACTGAGTAAGGTACCTTTCCGCGGTCACCCTGTCAGTTACCCTGACGATGTCCTGGGGTCAGCGGTTGTTAATTTAATGGTCCTTGGTGGGACGTCTAAGAGAGGAATAGAAAGCGTCGACCGATGGATCGACATGTGGAAATGTCAAATTGATCCAGATAAACAAGAAAGTTCCATCAAACGAATCGAAGTCCAGACCACCGTCCCAACCCAGTACAGTCCTACAGCATCGTACAACAGTAGTGTAGCCTATGTCAACTTTAACGTCACAgatgatgcaaatgataatgattattacgatgatagtgatgaaaatggtgaAACCACGGTCACAGAATGCATGCTTGTTGATTTATCTGATGGAGATACAACTAGTACAGACATGCTTCTTGTCGGTGAAACCGCTGATCGTTCCAAATCGCTGGCTCCTATCTCGATATAA

Transcript

alvinactis_v1_g1399

Protein

Uniprot

Uniprot term	Description
Q9QXT8	Calsenilin OS=Mus musculus OX=10090 GN=Kcnip3 PE=1 SV=2
Q9Y2W7	Calsenilin OS=Homo sapiens OX=9606 GN=KCNIP3 PE=1 SV=1
Q9JM47	Calsenilin OS=Rattus norvegicus OX=10116 GN=Kcnip3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR051568	Family	LZTR1/Attractin	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan