Genomic Location: chr_1:23903900...23906866
NR annotation: XP_020903785.1, 60S ribosomal protein L27 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families
| CDS |
| alvinactis_v1_g1415 |
| Transcript |
| alvinactis_v1_g1415 |
| Protein |
| alvinactis_v1_g1415 |
| UniProt accession | Description |
|---|---|
| Q7ZV82 | Large ribosomal subunit protein eL27 OS=Danio rerio OX=7955 GN=rpl27 PE=1 SV=3 |
| P61356 | Large ribosomal subunit protein eL27 OS=Bos taurus OX=9913 GN=RPL27 PE=2 SV=2 |
| P61357 | Large ribosomal subunit protein eL27 OS=Cervus nippon OX=9863 GN=RPL27 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007422 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01777 all species → | Ribosomal_L27e | Ribosomal L27e protein family | Family | Interproscan |
| PF00467 all species → | KOW | KOW motif | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038655 all species → | Homologous_superfamily | Large ribosomal subunit protein eL27 superfamily | Interproscan |
| IPR001141 all species → | Family | Large ribosomal subunit protein eL27 | Interproscan |
| IPR005824 all species → | Domain | KOW | Interproscan |
| IPR018262 all species → | Conserved_site | Large ribosomal subunit protein eL27, conserved site | Interproscan |
| IPR041991 all species → | Domain | Large ribosomal subunit protein eL27, KOW domain | Interproscan |
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10497 all species → | 60S RIBOSOMAL PROTEIN L27 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02901 | RP-L27e, RPL27; large subunit ribosomal protein L27e | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
