Gene detail

Detailed information of alvinactis_v1_g14161 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_7:3893752...3921646
NR annotation: XP_020896729.1, RNA polymerase II-associated protein 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g14161

ATGGAAGACCAGTTTTGTCCAAGGTGCAAGACAACAAAGTATCGAAACCCAAAGCTCAAGCTGATGGTGAACTTATGTGGACATAAACTATGTGACAACTGTGTGGAAGTGCTTTTCACACGACCATCAGCTGCATGCCCAGAATGCAACACTCCACTGCGACGTAGTGACTTCCGTTTGCAGCAGTTTGAGGATCTCATTGTTGAAAAAGAAGTTGATATAAGAAAAAGAATAGTTAGAATATATAATAAAAGAGAAGAAGACTTCAAGTCTGGGCCAAACCCCTTACGAAGCTATAATGATTATTTGGAAGAAATGGAAACTGTCATTTGGAACTTGGCTAATGGAATTGATGTCGATGAGACCAAGAAAGCTGTAGAAAAGTACAGAAAGGACAACGAAGCCTTAATCAGAAAGAACAATATCAAACTGGGCAGAGAAGAAGCAATTATTTTATACCAAATCGACGAGGAAGAAAAGTCTGTAGTATTTAAAAGGAAGCAAGTTGTAATGAATGACATGGAAGAGAAAAGGAAAAAGCAGTTGGAGAATGAATCTTTCCTTAATAACTTGGCTTTAGGTGATCGCCCTTTAGAAGAAATTGTCTCCGAGCATTCCAGTAACATATCCAAGAAACAGTCAGTGTTATTTTCTGCTATAAAGCCCAAAGATGAAAGTGTCCCGCTTCCATCACTGGATGCTCCATTGTTCCAGTATGTTGCTCGTGTTGAAGACAACCATGGTGTTGAAGCACCCTCCCTAGAAATGTTGGCATCCAGAGGATACTTGAAGAATATCCGTGCAACAACTGATTCAGACAAAGCTGGTGGCTACACTGCAGAGCTGGGATGTGGCCGTGCCATACAAGATGCCTTCTCTGCTTTATATTTAAATTGTGACACTGAAGCAGTGAATGAAGAGATTAAAGAATTCAAAAAGTATTTCTATGAATCATGTTCAGACAGTTCAGAAGAACCTGTTATGGAGATGGCTGCTCGACCAAAGCGAGGTGACACAGAAGACGACCTTCTTGAGTTTCAATCACAGTTTCTTTCAAGCAGAAATAACCCTTCAGCAGCTGTAGTGCGAGTGAGGAAAGATGGCTCTCACGACGAGCTTGCAGGGGAAACACACACTGGAGATAAGAGAACAGAGTCAACCATGCAACGAGATATCGTCGATCTACAAGGCCTTCCTCAATCACTTCAGGCTTCAATTGGTGATTTTGATCCTCCAAAGAAGAAATCTAAATTTAGAGAGAAAAGAATGGCAAAGAAGAAAGAAAAGATGGAGCCTGTATTTGACGATAATCAGATAGAGGATGCAGCAGAGCTTCTTGAGAGGCATGATAGACACATCTCTACTGTTCTAACTGAAATCAGGGAGAGGGATATTCAAAGAAGTGGTGTTTTGATGCCCACCAGAGTAGTACACAAAGGGTTTCCAGAGGCATTACACAGAGGAAACATTGCTGAGAAAAATAACAACAATCAGGGTAAAATAAGCCTGTTCGCCCAGCACTTCAAAGCATCCAACCCCAATGTGTTTGGATTACCGCAAATCACTCCACCACAAAACCTACTGCCCTCATTAAAGCACCATAAAGCAGCTACAAATATTGATCATCAAGCATCCCAGGGAAGTTCTTTTCAGCCTTCAAATCTTGTAAGTGGTGAAGGATTAACGTATCCAACAAGTGGACATCAACATTCAGCTACAACAACAGAAGCTGAAAGGATTCACCAGGAGAATGTGGAGAGGATGTCTGCTTTCACTCAAGAAGAAATAATGCAGGAGCAAGAAAGACTGAAAAAGAGTTTAGATCCTAGCCTTTTGACTTTCCTTAAATCAAGACATCAGAAAAAACTCTCACAAACTCAAAATGCTGCACAAGAGCAAGAAAATATGGAAATAGAAGAAATTAAACCTGTCTCATCAACAGATCCAGAAACTAAAATTATGTCTGACTTATATCAAACAAAACAATCATCCCAAGGCAATAATTCAATGGATGTTGAGATGGATATTGCTGCTTGCGACAACAACAAAGTTACTTCAAAACATGTTCATTTTGATGATAATATTAAAGTTATAAAACAAGTAGAAACAGCAAGAGAAATAAATATTGAAATTAAAGAATTATCTGAAATGGCAGCAACACAAAAGTGGGTTAATATGGGTACAATTGAAGAAGAGAAACTTGAATGGATGAAGGATTGTCAAACGCCAAGCGCAGTTAAAAAAGAGAGTGGAAATCAAGCGCGTTTTGCCTTTGATGGAAGTCTAATCACCAGAGGCGCTGATATTCCTGTCAACGTTGGTCTACATCACCATGGAAACGAACCAGATGCCGCAGGATACACACTAGAGGAGCTGTTTGTGTTGTCAAGAAGTAATTTCCTGCAGCAGAGGGTTGTTGCACTGCAGACTCTGGCAAGAATTGTAACACAGGATACGCAAGGCAGTTTTATCAACCTACTTCAAAGTTCTGTTCTATCCACTCTACTTGATGCTGGTATCATTTTCCTATTGCGTTGGGCTTTAGATGACACTGTAGATGCTGCCATGGCTGTAGCTGTTCAGTGTTTGTCATCTGTACTGGTAGTGCCAAGAGATCAAGAGTATGCTGACAGAGTATGCGATTGGCATCATGGACAAGAATTCCCTTCTCTACAACCTGGAAGTGATgaaaagaaagaagataaaacggatgacgaagatgaaaatagaaaacaggaaactgatacagaaaTAGTCAAAAAGGATGTTATTAAGGGACTTCTCCAAATGCGCATTTTACCTCGTCTTCGATACATACTTGAAATATGTAGACCAACTCCAACAACAGTAAGAGGAATATTCACAATTCTCACTAGAATTGCCAAACACTCTACAGAAGCTGCCCATGAAATCATGAAGTGTCCAAGAATGATTGAGAGTGTATTTTCAAAATTTCTACCAGCTTCTTGGAAAAAAGTTGATACACCATTAGATGATGTCACAGATATGTATGGACTACCATCACCAGAGGCTTTGCGATTGTTGAGGGCTGTTTGTAGTAGTGGAAGACATATTACTTCTCTACTGATTTCCAAGTACGGTCTGATGAGTTATATTCTGTGTTACACTTCACTTCATCCAAGAGACATCCAGCTTACATACAATGATGGAATGGATTTGTGCATAGAAAGTATTAGACTATGGACAGTATGCATCAGTTATGGTCTGGCCTGTGACCAATTCAGggaaaacttctctacgttgCTACAACACATCCAAAAACTCCAAGACCTTTCAGTGGTAAAACATAACATTGCTACCGAAACACTGCTAGAGTGTACCAGAGCTTCTGCACTCTTCAAATTGCTTGAGCAAGTAATCCATGTTGCTGGTACAAGTGCTGAGTTGCATGCTAAAATGATTGCATCATCTCCTGATTGCAAAAACGAAATGGAAGCAGACTGCCTTCCCCCTCCCCCTGTCAATTGGTCTCACGTCATGGGCTTCCTGCCTCTGGTTGTCTTTGCCCTCACCAAGTGGAAGACAGAAGTTGTTGGTTTACGGGAAGACTGTTTAAATGCTGTACTGGATTGTCATGTCCTTCGTTTTGCATCCATGTGTAATCTACTTGCATCATTCTACTCTAAGCTACCATCACAGCCATCTTTCTCGCCTGTGGACTCCTTGGAAGACATTGAGGACTTGGTGTCTACTATTTTGCTTCCAGTAATTAATTCAGCATTCATGGGATTTCTGATGAAAAGTTTAAGCAACATGTCCGTCACCTCCAACTCCATACTATCGACACGTGGAATCACTAGTATACCAGACTATGGCACCTTACCTTGTAGCACTCAACCTGGGATGACCGCACCCACTGAACCTCTCCCACATGGACCAGCGGCCACCTTCATGACGTCATTCACTCGTCTGTGTTGCAGTGTTATAAATGTTCATAAAGGGATTGCCAACAAGTTTCTCCCGTTCGTTACAAGAGAAGAGATGATCGAGTATGTAACGAGGATATCAACAACACAAGAAGTTCTTTGTCAGTCGTTCTTTGGTCGTGTTGAGCATCACTTGCAGTACTTTGTTGTAAAGTTGTTTTATATGGTGGTGCGATCAGTTGATTGTAATGACCTGACGACACCATTGTCTGTATACCATACTGCTGCTTTGGTTGTGTTTTCTCATCTACGTTCTGGAGATGAATACTATGCTCATGATCTCATGTCAACTGTGCTGTTTAACCCTAATTTCTACCCAGAAGCCACAGATCATGAAACCACTTGTGTAGCTAGAGAGCTATCAGAGATGAACATTCGATCACAAGGAACACCTACTGCACCTCAGTTATTAACCAAAGAGAACAGGTCCTATTCTCAGAAGGAGCTCCTGTGTGAGGCACATAAAAACCTACTTGCTATAAGGTCCACCTATATGGGGTCGTTTGGGAAAGTGAGGCATGCTTTGGCTGCTTCAAGAGCTCGCAGCCTACATCAGCCTTATGATATCCAATCCCTGCTGCTACCGTCGTCATCTGGACCTTTCCTGCCTGCTGATTGGATGTTTGTACCTGTTGTCGACCTACATAATCAAACTCTAAGCGCAGAGATGAAGGGTCGCGGAGTAGACGAGGTACCCCACGCAATGATCTCAACTGTCACGTGCACACTACAACTGATTCTAATGCTGGAGGAATGGCGCCTAGTCTCTTTAGCCAGCGTTACCATGGTAGCGAAGATTACTCGACTGATGTGTATCTTTTTAACAGGGAGTGACTTGTTTCTCGATCGTATGGTACATCACTATGCTAGAAGTCTTCTACTTATCTACACACGGCCCTCGTGTCTCTCTCGACTGGACTTTAGTGGGAATGTCGCTGGATTGAGCTCATTCTATGACTTATACACGTCATCGTTGTCGCATTATTCAGCTGTGTCATTCGGCGATCCATTGTTTGCTAGCTTCCTCGTCCTCCCATTGGCTCAGCGACAACATATCAAGTTTCGCCATGCATTATGGGACGAATATGTAGGGACGATCCGTGCTGTCTCTTTCCCTGTCAATCAGGTTCCTATACCGCTGGACCACTTTTTATATCCCATAGAACAAGACGATATTCTATTGTATTTATATTTACGAGCATTGTCCAATCAAGAAGCGCGACCTCGATGGTGTCCCTTCTTTTATCTCATAGCAATACACCACGTTAATGCGTTTATTTATCAAAGGATTAATCCTAAGGACACCGTGGTATTGAAAAGAAAATTATCCTTACTTAATCACGTGATGCAAGTTCAAATACAGGACGTGAGAAAGGACCTACTGTACTACTACAAGCCGCTCCCAGACTCCAGCTCGGACAAAGCGTTTGAGGTGTTCACCAGTCTCCCACCTGATCGTGAGATTTTGCTGAGAAACAGACAAGATTTCGAGGGATGCAAAAAGCTCTACGAAAACATGTCATCATAG

Transcript

alvinactis_v1_g14161

Protein

Uniprot

Uniprot term	Description
Q9BWH6	RNA polymerase II-associated protein 1 OS=Homo sapiens OX=9606 GN=RPAP1 PE=1 SV=3
Q3T1I9	RNA polymerase II-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Rpap1 PE=1 SV=1
Q80TE0	RNA polymerase II-associated protein 1 OS=Mus musculus OX=10090 GN=Rpap1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08620	RPAP1_C	RPAP1-like, C-terminal	Family	Interproscan
PF08621	RPAP1_N	RPAP1-like, N-terminal	Family	Interproscan
PF17121	zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF06391	MAT1	CDK-activating kinase assembly factor MAT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013929	Domain	RNA polymerase II-associated protein 1, C-terminal	Interproscan
IPR013930	Domain	RNA polymerase II-associated protein 1, N-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR039913	Family	RNA polymerase II-associated protein RPAP1/Rba50	Interproscan
IPR015877	Domain	Cdk-activating kinase assembly factor MAT1, centre	Interproscan
IPR004575	Family	Cdk-activating kinase assembly factor MAT1/Tfb3	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21483	RNA POLYMERASE II-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0005675	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0045737	Biological Process	positive regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0061575	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20826	RPAP1; RNA polymerase II-associated protein 1	-	Transcription machinery	ko03021	deepkoala