Gene detail

Detailed information of alvinactis_v1_g1433 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:24154694...24162263
NR annotation: XP_020913081.1, RNA polymerase-associated protein LEO1 [Exaiptasia diaphana]
Species abbreviation AIDSS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NYV9	RNA polymerase-associated protein LEO1 OS=Danio rerio OX=7955 GN=leo1 PE=1 SV=1
Q8WVC0	RNA polymerase-associated protein LEO1 OS=Homo sapiens OX=9606 GN=LEO1 PE=1 SV=1
Q5XJE5	RNA polymerase-associated protein LEO1 OS=Mus musculus OX=10090 GN=Leo1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007744 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04004 all species →	Leo1	Leo1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007149 all species →	Family	Leo1-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23146 all species →	LEO1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:1990269 all species →	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15177	LEO1; RNA polymerase-associated protein LEO1	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.