Gene detail

Detailed information of alvinactis_v1_g14343 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_7:6060062...6074363
NR annotation: XP_020894271.1, alpha-actinin-1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g14343

ATGGCCGATGATGAGCGGGAAGTCTATGGGTATTATTATGGAGAAGAAGATAAAGGATTGCTTGATTCAGCATGGGAAAGACAACAGAGAAAGACTTTTACGGCGTGGTGTAACTCTCACTTGAGAAAGTATGGAAAGCAAATTGGAGAACTTGAAGTCGACCTTCAGGATGGTGTTCTACTCCTCATACTTTTGGAGTGTCTTTCAGGAGAAAAGCTACCGAAAGCGGAAAAAGGCAGACTACGCTTTCATCGCATTGCAAATGTGAATAAAGCGCTAGACTTTGTAGCTACTAAAGGAGTGAAACTGGTTTCCATTGGAGCTGAAGAAATTGTAGATGGTAACCTCAAAATGACGCTGGGAATGATATGGACCATCATTTTGCGGTTTGCTATTCAAGATATTGCTATCGAAGATTCGTTTGCTAAAGATGGATTATTGTTGTGGTGCCAGAGAAAGACAGCTCCATATAAGAACGTCAAAGTCCAGAACTTCCACACCAGTTTCAAAGATGGCCTTGCATTCTGTGCCTTGATTCACCGTCACAGGCCCGATTTAATCCAGTATGACGCTTTGAGGAAGGATGATCCCTACACCAATTTAAGAACTGCCTTTGATGTAGCAGAGAAGTATCTTGATATCCCTAGAATGTTGGATCCTGAAGACCTGGTAGAAAATGAAAGACCTGATGAACGTGCTGTTATGACCTACGTCTCTTCCTACTACCATGCCTTGACTAGCTCCCAACAGGCTGACACAGCAGCCAAGAGAATTGGCAAAGTCTTGAACATCAACAGAGACAATGAGAAAATGATGGAAGACTATGAGAATTTGGCCAGTGATCTTCTGGATTGGATCAACCAAAAACTCCCCCAAATGGCAAACAGGGAAACTGATGGCACTCTTGCTGACATGCAGAGGAAAGTTGAAGACCTACGAAAGTATAGGAGAGAAGAGAAGCCTCCAAAGGCAGAGGACAAAGGTACCCTTGAGACCAACTTCAACACACTCCAAACAAAACTCAGGCTGAGTAACAGACCTGCATTTCTGCCCACCGAGGGAAAGATGATCAATGACATCAACGATGCATGGGGAAAACTAGACGCTGCAGAGAAAGATTATGAAGACTGGCTGTTGATAGAAATGAGAAGAATGGAACGACTTGACCACTTGGCTGAGAAGTTTAGGCATAAGTGTAATATTCACGAACAGTGGACACAGGGAAAGGATGAGTACCTCTCACGTGATGATTACTCCAATGCCCCGTTAAATGATGTTCTGGCTATGATGAAGAAACATGAAGCGTTTGAAAGTGACTTGGCAGCTCACCAAGACAGAGTAGAACAAATCACTGCCATTGCACAGGAGCTCGTTTCATTACAGTACAGTAAAGCGGATGATGTTACAAGTCGTTGCCAGAAAATCTGCGATAACTGGAACGAACTTGGTGAACTAACGGGAAATCGTCTTCAAAATCTCCAGGAAACTGAACAACGCCTTCAACAGCTCGACAACCTTCGTTTGGAGTTTGCCAAAAAAGCGAGCCCTTTCAACAACTGGCTAGAGGGAGCCAGAGAGGATCTGATGGACATGTTTATCGTTCATACAGTAGAAGAAATACAGGAACTAAGAGATGCACACGAGACCTTCAAAGCCAACATGCCTGCCGCTCAAGCTGAATACGAATCAATAACGGATCTCGACAATGAAATCAAACAACTAAGTGATCAAGAAAATCCCTACACATCTCTGGTTATCGAAGATATTATAATTGCTTGGAATGAAGTGTTAGGTCTTGTTCCTAAACGAGACGATTTATTACGCGAAGAAAACTATAAACAAGAGCAAAACGAAAGACTGCGTATTGATTTTGCCAAAAAAGCCAATGTAGTTGGACCCTGGATCAAGCAAGAAAGCGAGAAACTTCGTAGTATTGTCTTCAACATGACAGGATCTCTAGAGAAAAATCTCAGTATTCTCCAACAAGAAGAGACAACACTTTCGGGTTTCAAGCCAAACATCGAAGAACTGGAAGTGATCAATCAGCAAGTACAACTAGCTTTGATATTTGAGAATCCACATACACAATACACTATGGAGGACCTCAGAGTACGTTGGGAGCAGCTTCTTACAGCAACAGCCATGAACATCAATGAGGTGGAGAACCAGATATTGACTCGCGACTCCAAGGGAATCACACAAGAACAAATGAATGAATTCCGTGCGTCATTTAATTTCTTCGACAAGGATGAAAGTGGCAAGCTTGAACCTAACGAATTCAAACAATGTCTTGTTAGCTTAGGATACAGCTTAAAGGAAGGAGACAAGGGAGATAAAGAGTTTGAACGTTTGATGAGAATCGTGGATCCAAATAACGCAAAGAAAGTGACATTCCAGGCGTTTGTGGACTTCATGACGAGAGAGACCGCTGACACAGACACCGCAGAACAGGTCATGGAATCCTTCAGGATTTTGGCTGGAGATAAGCCGTTCATCACCGCTGAAGAACTTCGACGAGAACTACCACCAGACCAAGCCGATTACTGCATTGCACGTATGGCTCCATACGAAGGCAGAGATACCGTACCTGGCGCACTGGACTACATGTCGTTCTCCACGGCCCTGTATGGCGAAAGCGATCTGTAA

Transcript

alvinactis_v1_g14343

Protein

Uniprot

Uniprot term	Description
P05094	Alpha-actinin-1 OS=Gallus gallus OX=9031 GN=ACTN1 PE=1 SV=3
Q9Z1P2	Alpha-actinin-1 OS=Rattus norvegicus OX=10116 GN=Actn1 PE=1 SV=1
Q3B7N2	Alpha-actinin-1 OS=Bos taurus OX=9913 GN=ACTN1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF08726	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR001589	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR014837	Domain	EF-hand, Ca insensitive	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030018	Cellular Component	Z disc	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0055001	Biological Process	muscle cell development	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala