Gene detail

Detailed information of alvinactis_v1_g14456 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_7:7656012...7666063
NR annotation: KXJ14844.1, Scavenger receptor class B member 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g14456

ATGAATTTACAAACCAGAAAACGAACGAAAATAATACTTGTTGTCCTTGGTCTGATATTTGTGGTTATCGGAATACTGGCTGGCCGTTTTCTGGTGCGTTCGATATCCAATCGTGTAGAAAAGAATAACTGTTTGCCGATAAGTAAATCAACAGCGGACTATGAAAAATGGGCCGCTGAATCTCAGCGAAAAACATCAGTTTATTTCTGGAACATCACAAATAAACAAGATTTGTTGCTTAAAGGAAAAAACCCAAAGTTCGAAGAGCGTGGACCGTACATCTACACCACAACCACTAAGAAGATAAACGTGATTTTCCAACCAGGCCTTTTGTCTTACAAACAATACACAAAACAAGAATTCGATGCCACCTTAACCAAGGAAAAGTGTCCAGAATGCAGCGAGAACGACAAGATGACCGTATTGAACATGGCCTATATCGGTCTAATGACGCGCTTTAAAGGAGACCAAAAGTTCAGCATGTTTATGATTCCTAATATCGTCCAGGGATATGTACGAGGACTAGATTCGAAACTAGGCAGCCGACCTACCGCCCTCGCGTATCTAGGCAACGTACGAGCTCCCTTGAATACTCCAGGGGATCCTGCCTTTGGCCCCTGGCTCGGCAAAAACCCCGCCTTTGTGGCAGCTATCGTTAACGCCACGAGAGGAGGACAAAACTACAACTCAACAGAAATGAATGGATTGTATAAAGTTCTCACCAATATTACTCTGCTATTGGCGCCTCAAGCCCCTAAAGGTGCAAATCCCGTAGCAAAAGGCATAGGGCTTGTGACGTATCTCGTAACGTATGTCACAATGAATAAAACTATCAGTACAATAACCAATGCAACGATCAAAGCAGCATATGCCGCGAACCTCGAGCAAGTACGAGCCAATATGAACGAACTTTTATGCGCCAACTCCTCGAGCTGCTTCTACATCAAGGACCTCATAACAGTCCAAGCGCTGTTGGTATTCATCACGTCCCATCTCGCCGCGAGTTCCATGGAGTTTCTTTCCGCAAACAACTATGGGCTGATAGTCACGCGTCCCGTGAAAGAGTTGGTGTTTGGATATGCGATGAGCAAGCTCCCTCTACCGCCACTGTACCCGAACGGTGTACCAGTTCCTGGTGCGTTAGTTAATCATAGCAGCGAGGCAGACGCTATCCGAAGAGAGAAAACTACATCGCTACACACTTGTGAATCAAAAACGGGAATTCCTAATACTTGGGCAGcagtagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtggcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtggcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtggcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtggcagcagcagcagcagcagcagcagcagcagcagtgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcacagtagcagtggcagtggcagtggcagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtggtagtagaagtagtagtagccgtaTAGAATCAACAATTCAACGTTCTCAATATTTCCAAATTGGgcatgtttgtttgcctgcaggtttgtttggtgcgctgtttgtacgactgtctgtttgtttgctgggtttgtttggtgcgctgtttgtacgactgtctgtttgtttgctgggtacgttgcatgtttgtttgcctgcaggtttgtttggcgcgctgtttgtacgactgtctgtttgtttgctgggtacgttgcatgtttgtttgcctgcaggtttgtttggtgcgctgtttgtacgactgtctgtttgtttgctgggtacgttgcatgtttgtttgtctgcaggtttgtttggtgcgctgtttgtacgactgtctgtttgtttgctgggtacgttgcatgtttgtttgcctgcaggtttgtttggtgcgctgtttgtacgactgtctgtttgtttgctggGTAAACAACGTGTCGGTGTTTATGGATGGTATCTTTGA

Transcript

alvinactis_v1_g14456

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01130	CD36	CD36 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002159	Family	CD36 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11923	SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005044	Molecular Function	scavenger receptor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13863	SLC7A1, ATRC1; solute carrier family 7 (cationic amino acid transporter), member 1	-	Transporters	ko02000	deepkoala