Detailed information of alvinactis_v1_g1447 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:24367338...24390856
NR annotation: XP_020913069.1, protocadherin-like protein [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B8V7Q1Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q8BNA6Protocadherin Fat 3 OS=Mus musculus OX=10090 GN=Fat3 PE=1 SV=2
Q8R508Protocadherin Fat 3 OS=Rattus norvegicus OX=10116 GN=Fat3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028CadherinCadherin domainDomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR001734FamilySodium/solute symporterInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR039808FamilyCadherinInterproscan
IPR000515DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027CADHERIN-23Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0045296Molecular Functioncadherin bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0098742Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16669FAT4; protocadherin Fat 4-Cell adhesion moleculesko04515deepkoala

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