Gene detail

Detailed information of alvinactis_v1_g15533 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_7:22722598...22747963
NR annotation: XP_031552431.1, uncharacterized protein LOC116289623 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g15533

ATGCGCAGGATTACAGAGCAGCAGGCAGTATATAAATTTCAGAACAGTCCAGTAAGAGGTAAACAGAAGAGAAAACGCCTCCCTGGACAGACTTGCCATCATTGTGAGAAGTACTGGGAAGCAATTGCAGAAGATTTCGGAGAAGAGGAAGCGCAAAGAAGAATAGACAAGGCATCTAAACATCGCAGTTTATTCAAGGCCCCCAAAACTCCACCAGGATTTTGGGATGTAGATTTCAATGAGTCAGTTCCAACTCACTTGCAAGATGGCGCCAAAACGGTTGAAGTTGAACATGACGAGAACTCACAATCTAATTCTCCGCCGAAATTGGCTGACGATATCTCAGAATGGACTTGCAGTGATGTGAATTTGTGGATCGGTGAACTATTTGAAAGTGACCCAAGTATATCTTCTAAATTCCATGAACAAGAGATCAATGGATTGACATTAATGTCTGAAAGAATTTTAACAGAGGATAACTTGAATCTTTTGGGACTTAGAACGATCGGGAAGAAAGCAAAATTCACTGGAGCGATCGAAGAACTGAAAGgcattacaatgcctgatgatgacacacactacagagttgtactcatgaaggttcaatatccgtatcgacactccatagtgatgacatatcatgtaccacagtgtttgatgatatcgtacttaaacaatagcaaattgagtctcccgcagcgaaacaactcactttcaaaGAAAAAGAGGATTTTGAACCACATAAAAAGTGTTTGGCCCATGAACCAGCCCACACCCAAATTCAGGTCAAACTCTGATAATGCACAGAAACTACAGGAAATGTCAGATATACTTTCCAAGAATGAATACTACATCAAGCCATCAGTGGGTTTAAGGAAGAATGCAATCATGGACATCATAAGAAGACACATGATGGAAAGACGAAGGAAAAACAGTGACCCATTACTAAACAGTATGGAAGAAGCAACAGAAGAAGAAAGCGATAGCTCATGCTCTACCACTACAACAGTAAGCTCAAAGAACAACAGTAGTCCTGTGCTTGTCAAATACAGTCCACCCTATGACCGAGATGAGAAATGCAATAAAGTAACCGAGTATAATGCTTACTTTAAAGAAGGTCTTACTCTGCCTTCAGCACAAGCAATTATATTAAAATGGCTAGACAAGCCAAGTATGAAGGACATCAGACTTCAAGAACTGAAGAAAAGTGCAAAGGAGCTCGATATGAAACTCCTAAGAAACAAAGACAAAGACACGCACATTTTAGGGATTGCATCACAATTGCTAATTAGAAGAATTGTCAAAATTCGTGAAGATGAATCACAAGAAGACAATTTTCTGGTGGAGGATGGTAAATCGAGAGAAATGATGTGTGGTACAGAAAATGCAAACTCCAGGCAAAGAGACACAGAAGTGCTGgcggagccaatgttaatggcagcaatcttaaaacctttaGTAATAGGTAAATTCAGACTAGGTAAAGGTATTTTGGTTATAGAAAGACCTTGTTCTATTGTGGTAAATGTTGTTGAATTATTTGGATCTGAAAGTAAGTCTCAAGTGTATGGTCATCTTCACGATCTTCTTCAAAAGCAACAAATGGAGAAAACTAtcttcaataaactaggttacatagcagctattgaagctgtctatcatggttgtttacagtcagcaatggggaagatccagagcgagcaggcttacattgataatgatggcgatacgctagacatgactcgtccagaaatgctcagcacacaacagcagcagcactgtcttactagtcattctattgctgaactagtacatgataatgtacctgccatccaaaaatgggcaatcaatgaaaaacatatcatgaactcctatgatacttggcatggaggtaaaaatgttaaaaaatctgtgtcgaaggtcgctagtgggacgaagaaggagggtaaaacctggttttcagatcaatcagataaagtcaaagcaacaaagacccatttttactacaccatgaagaggttcagtgaatatggcgatcaggaagagtttcggtcagcattattgaatataatatcacactaccagggtaaccattcacaatgctcagttgacagtagatgtcacatggtggactgtgtgtgcagcaagaagcctttggtaaatccaaaggctattgaagcattcaagaaagccatgaccggcacactagtttacagaaacccacaagactatatgagagtttctggccttacgtatgttcacgagttagcAATGGAAAAAAACGAGCTAAATACGTCATCAAGTAGTCCGGTGCCTGAACCGGCTGAAGCCAGTGAAGGCGAAGCAATACCGATGCTGGAAGTGGCTGCAGAACCGCCTCAGCCGGCGGCTCTTCAATGTCAAGGCCAATGGGCACAGCGTGATAAGTGTTACAATGACGAATCAGCAAGATTCAGAAAGCCACATACGAAACCGTTTGTAATGGCCAAGTACGCCACCTCATCCAATGTCGTCCGTCTTCACCTAAACAAGGAAGACAATATCTCCACCATCGACGTGCTACGAGCACTAAACCAACACCAAGACTCCATCATTGGAGCGCAGACAAGCTATAAAGGTCAGGCCATAGACGTCGTCTGTACCTCCGACACCGTTGTGGCCGAAATCGCGACACAAGGCATCGACCACGAGGATGTCGATGCGGGACCATACAGAAGACACGCCGCTTACACTACAAAGAAACCGATCTATCCAGCTATGAAAACGGCGTCCGGGTGA

Transcript

alvinactis_v1_g15533

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08573	SAE2	DNA endonuclease activator SAE2/CtIP C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR013882	Domain	DNA endonuclease activator Ctp1, C-terminal	Interproscan
IPR033316	Family	DNA endonuclease RBBP8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15107	RETINOBLASTOMA BINDING PROTEIN 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0010792	Biological Process	DNA double-strand break processing involved in repair via single-strand annealing	Interproscan