Gene detail

Detailed information of alvinactis_v1_g16619 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_8:9970861...9982368
NR annotation: XP_020899429.1, E3 ubiquitin-protein ligase TRIM71 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g16619

ATGAGCGCAACCAGGACGCACAAGATTACTTCAGTTCAAGAACTTCGAAGTATAAAGTCAGCGAACCCTTCCCTTCCAAGACCCTGTTTCTGCGTACTCCATTCTAAAAACCAAATACTTTACTATTGTCATACTTGCAAAGTAGCCGTGTGCCGTGAATGTGCTGTATCGCAGCACAGGACTCACAAACTACTGCGACCAGACAAGGCTTACAGCGAACTCAAATCCAACATTATCAACATGGCAGACAGAGTTCAAAGAAAACGGAAACAAATACAAAACTCTGTTTCTTCTTTACAGAAGACGATTTCCAAGATCGAAAAGCACTCGTACAAAGTCCGGTGTGCCATCGAGGAGTACTTCGAGAATCTCCTGATGGCGGTGCGTCAGAGAATGAAAAAGTTGTTGTCAGAGTTAAAAGATAAAACCGAAAGCAAACTAAACAACCTACAAGATCAGAAATCGAGATTGGAGCTCGCTTTAAAGGGAGTCCAAAATTGTTGCTCGTTTACCGAGAGTGCGGTAGTACGCGGTACAGATATTGAACTGATTAGCGTGAGTCACGCAATCCTACAGAGGCTCACGCAAGTCCACCAGGAAGAGCTCTCTTCCCCACGCGATTCTGACGGCGATAATCACGAAATTCTTACTTTTACAACCGATGGAGAAGACTTGATCCAGATCATAAACAATATGGGATGTTTGGATGACGCCTGTCCCCCTACCGACCCATCCCTCAGTATTTTGACAGAAAGTGCGTTACAAGTGACCGTTGAAGAAGTGTCACGCTTTAGTGTCACGGCAGTCAATTCTAAAGGATTTCGACAAACCAAGGGCGGTGATACGGTCGCAGTTCAGCTATATATCCTTAAATCGCAGGTAAATGCTGACAGGGTGGGGTTCAAGTACAGCGTACACAACAACGAAGATGGCCAATATACCATCGCTTTTCTAATCAATAAGACAGACACCTATGCTATGCACGTGAATCTGAATGGACACCCAGTTCAAGGCAGTCCACTGACAGTAGCGGTCACCCCAAAGGACTGGATAGGCAGTGGGTTTATTCTAAGCGGTGAAAAATGTGGTGGATTTTCCAGCCCCCACTGTGTTTTGGTGGACAATTTGGACAACATTGTAATAGCAGACTCGCACAGTCACAAGATCAAAACCGTTGACTCTACGGGTACTCTGAAGAGAAGTATTGGAAGCCAGGGCACACGTGAAGGACAGTTCAATTTCCCATACTGCATCGCCTTGAATCCCTCCAACAACCTGCTGGTCATCTCGGACAGTCACAACAATAGAATCCAAGTAGTCGATAATGTTTCGGGAAGGTTTCGCAAGAGCTTCGGTACTTACGGAACTGACGAAGGAATGCTAAACCATCCGCATGGAATAACAGTTGATTCCAACGATTCCATCTACGTGGCTGATTCGGGAAACAGTCGGGTGCAAATATTCTCCCCAGAGGGGTACCTGTTGGGTAAATTGGAATCGAAATATCTGAGTCGACCATGGGGTGTGACTGTGACCCGGGACGGTCTTATAGCAGTTAGTGATTACAACAATCATAAAGTCTTAGTGTTTAATAAAGACGGTACACTAAAGTTTCATTTTGGTTCCCGTGGGGGTGGTGATGGGGAGCTCAATAACCCTGCGGGAATCGTCGTCGACGCTGAAGATCAATTCATCGTCGCTGATCGTAGCAATCACAGAGTTCAGATCTTTCAACCAGACGGGACGTTTGTTACCAAATTTGGAGGCAAAGGGACCGGAAATGGACTGATGAGGTTCCCTGCAGGCGTCGCCGTGGATAAATCAGATGTCCCCACACCTCCTGTGCATCGGCTTACGTTGGCAGAAGTGTTCGATTCTAACGGAAAACCCCGGGCAGATGTATTAAAAGCTCACTTCATCCTAGAAGGCCGAGTCGAGGAAGATGTGGCTATTCGAATTATCAACGAAGGGACGGAACTTTTACGAAAAGAAAAAAATATGTTAGAAGTCGATGCACCTATTACAGTGTGTGGTGACATTCATGGTCAGTTCTACGACTTAGTCAAACTGTTCGAAGTTGGAGGATCTCCTCAAAATACCCGGTACCTGTTCCTAGGGGATTACGTCGACAGAGGGTACTTCTCGATTGAGTGTGTTTTGTATCTATGGGCTTTGAAACTGCTGTACAGCAACACGTTATTTCTCCTTCGAGGGAACCACGAATGTCGGCATCTCACCGAATATTTCACCTTTAAAACAGAATGTAAAATCAAGTATTCAGAAACAGTCTACGATGCTTGTATGGATTCCTTCGACTGCTTGCCACTGGCAGCTCTGATGAATCAACAGTTCCTATGCGTCCACGGTGGACTTTCACCGGAAATTCATACGCTAGAAGATATTAAAAAGCTTGATCGTATAAAAGAACCACCAGCGTTTGGTCCTATGTGCGACCTACTTTGGTCCGATCCTTTGGAGGATTATGGCAATGAGAAAACATCGGAGCATTTCAGCCACAACACAGTGCGGGGGTGCTCATATTTCTATAGGTAA

Transcript

alvinactis_v1_g16619

Protein

Uniprot

Uniprot term	Description
Q08209	Protein phosphatase 3 catalytic subunit alpha OS=Homo sapiens OX=9606 GN=PPP3CA PE=1 SV=1
P63328	Protein phosphatase 3 catalytic subunit alpha OS=Mus musculus OX=10090 GN=Ppp3ca PE=1 SV=1
P63329	Protein phosphatase 3 catalytic subunit alpha OS=Rattus norvegicus OX=10116 GN=Ppp3ca PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043360	Family	PP2B	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR006186	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45673	SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005955	Cellular Component	calcineurin complex	Interproscan
GO:0033192	Molecular Function	calmodulin-dependent protein phosphatase activity	Interproscan
GO:0097720	Biological Process	calcineurin-mediated signaling	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan