Gene detail

Detailed information of alvinactis_v1_g16628 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_8:10136694...10148314
NR annotation: XP_020899434.1, myelin expression factor 2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g16628

atgacacctaaaaggtacctgagtctcttccaaGTGaaaaaaaagaaaagaaaagaaaaaaagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagaTTACTTAATCACCACGTGACAATGAGGTTCATATCGCAGAGGCTCACGGGATATCCCTTCCTTCGACTCAACATGGTGGACCAGCAAGCGGCCATTGACGCACAACTGCCTCTAGGCATGTCTTATTCTACCGCTTACTCCCTAGGAATCGAATCCACCCCTGGCTACACAGCTACTACAGTCCAAGATTCATCAGATTACAGAGAAGGAGGCAAAGACAGCGATCCAGAAGAGAGTAACGGGCGACGACGTGGTGGCAACTTTGAACGTGATTTGCGAGGAGATCGCGAAAGCCGTCGTTACACGCCGTACTCTACAGCGAGAAATAAAGGCCGTGTGTCCTCCAGCGCCTTGAAAGACCTTCGTATTTATGTCTCGAACATCCCTTATACTACTCGCTGGCAGGAACTGAAGGACTACATGAAAAAAGTTGGAGAAGTCTCATTTGTGGAAATCTTTGAGGATGAAAAGGGCAGATCAAAGGGTTGTGGGGTTGTGGAGTTCAAGAACAAAGAAGATGCAGAAAAAGCTATTGCGGAATGTAACGGGAAGGACTTTAGTGGAAGACCACTACAAGTCAGAGAGGATCGTGTTGAAGAAGACAGTAGAATGCACCGATCCAAACTTCGTGGCAACACGGTGATGCAAAGCCCAGGAGGCGCTCCAAATGTACTTGGTAATCTACCAGCGTTGCTTGGTCTTGGTGGTTCTCCAAGCATGGCAAACAAGTCTAACGATCCATCAGCAGCGACAGTATTTGTTAGCAATCTTGATTATAAAGTGACTTGGCAAAAGTTGAAAGATGCTTTCCGTGTTGCAGGCAATGTTGTAAGGGCAAACATCAAAGAGGATGACACCCAGAAGTCTAAAGGCTATGGAACAGTACAGTTTGAAAGTCCCATGGAGGCACTTAATGCAGTCACCTTGTTAAATGGTCAAATGATACTGGACAGAGCCATTACTGTTAGAATGGACCGTAATGCTAATGTACACGGCTATCAAGGATCAAGGCCATCAAGCCAATCTATGGCTTCAAACCCTCTAGCATCTGCAGCAGGGAATCCCATGGCAATATTGAACCTCCTACAAAGCATCCAAGGGTTGACGGCACTGGCCCAGCTCggtaaccttggtggtaaccttggtaaccttggtggtaaccttggtaatcttggtaaccttggtaaccttggtggcaacttggGTGCTGGTCTTGGTGGTGCATCCACTAATCAGGCATTGAGTGCAATGAGTTCCTTACCGTCGACCAGTTCTGGCGCTGGTGTTGGAGGTATGGGGATGGATGCGGCTAGTAACCTGGCCGCCCTCACCAGCCTTGGTGGGATGATGAATCAGCTTGGTACAACGACAAGCTCAGTGTCGGGAATGGGTTATGGTATGGGTCATATGAGTACTCAGGCTGAAAACAGCTCAGGAAAACAGATCTTTGTGAGAAACCTTCCTTGGAAATACACATGGCAGGACCTGAAAGATAAGTTCAGATCTGCAGGTAAGGTAACACGTGCCGACGTTTTGGCAGAGTCTGGTGGTCGATCCAAAGGATGTGGCATAGTTGTCTTTGACACACAAGAAGAAGCACAAAGAGCCATTGCTATGTTTCATGGCATGGCATGTGATGGCAGAGATATTGATGTAAGACTTGTACCGCTGTTGGCTTTTAGTTCTGTTTTGTTGGAGTTCGTTTTGTGTATTGCTATGGTAGATGAAAGACATGAGTTTGCTTTGGGTCGGAGAGAACACCAGCTGAAGAAGACGAAATGTGATAGTGCATCAGAGCAGGAGCTGCAATGTTGTAATTATCTGACGCTTGGAACTGACTACTGTCGTGGTTGA

Transcript

alvinactis_v1_g16628

Protein

Uniprot

Uniprot term	Description
Q9P2K5	Myelin expression factor 2 OS=Homo sapiens OX=9606 GN=MYEF2 PE=1 SV=3
Q8C854	Myelin expression factor 2 OS=Mus musculus OX=10090 GN=Myef2 PE=1 SV=1
Q9D0E1	Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus OX=10090 GN=Hnrnpm PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24992	MYEF2; myelin expression factor 2	-	Transcription factors	ko03000	deepkoala