Detailed information of alvinactis_v1_g1866 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:31397309...31446547
NR annotation: XP_020899697.1, collagen alpha-1(I) chain [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P39060Collagen alpha-1(XVIII) chain OS=Homo sapiens OX=9606 GN=COL18A1 PE=1 SV=5
P39061Collagen alpha-1(XVIII) chain OS=Mus musculus OX=10090 GN=Col18a1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF06482EndostatinCollagenase NC10 and EndostatinDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF20010Collagen_trimerCollagen trimerization domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR010515DomainCollagenase NC10/endostatinInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050938FamilyCollagen and Collagen-like Structural ProteinsInterproscan
IPR045463DomainCollagen type XV/XVIII, trimerization domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37456SI:CH211-266K2.1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan

TOP