Gene detail

Detailed information of alvinactis_v1_g20167 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_10:14579070...14589445
NR annotation: XP_020910029.1, uncharacterized protein LOC110247877 isoform X1 [Exaiptasia diaphana]
Species Alvinactis idsseensis sp. Nov. · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

alvinactis_v1_g20167

ATGAAGTTTAAGCTGAGCACAAAGGTTACAGGAGCACGAAGGACAGAAAATGGTGTTGTTGTAAGTGTGGAGTCAGCAAAAGATGGATCTAAGAAAGAAGAGTTGGAATGTGATGTTCTGTTGGTATGCATAGGGAGGAGACCTTATACCACACGACTTGGCTTGGAGAAAATTGGTATACCCCTGGACTCCAGAGGTTGCGTGCAAGTCAACGAGAAATTCCAAACCATCATCCCAAGTGTCCATGCCATTGGTGACTGTATAGATGGACCCATGCTGGCGCACAAGGCTGAAGATGAAGGTATTATATGTATAGAGGGAATGAATGGTGGTGCAGTACATATTGACTACAACTGTGTTCCTAGTGTCATCTACACTCATCCGGAAGTAGCCTGGGTGGGGAAATCAGAAGAAATGCTAAAAGAAGAGGGTGTGGTCTACAAGGTTGGCAAGTTCCCTCTGTCTGCCAATAGCCGAGCTCGAACCAATGCAGACATAGATGGTTTAATCAAGGTCGTGGCTGACAAGGAGACGGACAGATTATTGGGTGTGCACATGGTTGCACCTTATGCAGGAGAGATAATCAACGAAGCTGCCTTGGCTATGGAATATGGTGCATCGTGTGAAGATATTGCACGAGTTTGTCATGCCCATCCGGAAACATTCAGAGTGGATTCTGATCAGGAAGTGTCGTCAAACAGAGCAAGACATCGACAGATTTTCCCAGGCGAGACGGGGACCTTCTGGACCATCATTCGCCACATCTTCTATGCTGTGTCCTTTCTGACCCACACCAGTATTGCTGTAACATTTCTGAGTTTCTTTGTCACAGCACTCAGCTTCAGCGTCAACTGTGCTTTGGAACTAGTACTGGAAATGATAACACCAACAGGAGACTCCACGAGCAGAAGAAACTTCTACGCTGCctgcttgtttgttcttcttctttgctttctattcactagctcctttgtgctttctctgttctGGGAGGTAGTGGTGGTTGTTCTCTTCAAGTCTGCGATGAGATACACCAACATCAAGATTGGCCTCTGTGTTGCAGTTCTTATCTGCGCGGGAAGTTGGTCTGGGGTTACTGAGTCGGCGCAAACTGGTTTCATTTTATTTCTCTCCAAATGCTTGATAGTAGCTTGGGTGATGGCTTTTATTTTGTCTCTCCTGGGATCCCTGTTTCTCTTGTGTTTCGTCTATAAAGCGGCCAGAGGAAGCAAGGAAGAAGCGAACGGATTCGTGATCCAGAAGAAGATATTCTTGCTGATATCCGCTGTATTCTTGGTCATCGTCATCGTGGGCGCAAGCATTACTATTTCATGTGGTGAGGAATGTCAACTCGGTCCACCAACGAAGGGCTCGTCCTATATGCTAGGCTATAACTTGATGAAGGACGCACCTAGAGTCCCTGGTTATCCCATTTGTAACAAAAAGTGGAGTGGACTTCAGTTGGAAATAACCGACATGGCGTTTCTAGCCGACACCGCGTACAAAATCCAAAAACATAACAAGACTAACATTCGTGACATTGTTAATGAATATTTCAGAGATCGTAACATCAATTGGGACGTCGAGTCGGTCAACGCGAAGAAGCCTTTCTTTTTCCACATTCGTAATTCGGCCAAGAAGGTGAACATTTTCAGCATTCGAGGAACTGTTGATTTACGAGACTGGTTTGAGAATGCTAAAATGTGGAACGAAATAGCAGTGTTCCAGTTGATCTCCGTAGCGCTACCCGTACAGCACTTGCCGTTTGAGTTCGTAGCCTTCTTCATATCCAAGTCGGCCTCCATCGATTATCTTCTGCATCAATCTACGTACGGCCATTACTTCAAGCCTCTGGAAGACTACGTGAAAGCAGAGTACAACACTTCCGAGGAATACTTTCTTGTTGGTCATTCCCTCGGTGGTGGGCTGGCGAAGATCATTGGAAGCAGGAATAAGATTCCCGCCATCGCCATCTCCAGTCCAGGCGAGATATACAATCACGTGAAGTTCAACTACACGTTGGAAGACGTTCAGAAATACACAACAACAATACGCGCTCAAAACGATCCTGTCACGTGGATCGACAGGTCTGGAGGCCTGGTGCAGTACGTGGAGTGTGACAACTCCGATTTTATGAAGTGTCACAACATCCGCAATACCTATTGTGAGCTCAAGAAGAAGTGTCACGCAACAACACGAATTCACTGTCCTGGCGATCCCAACTCGTTAGATATGCTGATGGATAAGTTGCGTATCAAGCAGCCAAAAAACGTCTGA

Transcript

alvinactis_v1_g20167

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1N206	Dihydrolipoyl dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=DLD PE=1 SV=2
Q8CIZ7	Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus OX=10029 GN=DLD PE=2 SV=1
P09622	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=DLD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002947 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02852 all species →	Pyr_redox_dim	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Domain	Interproscan
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR004099 all species →	Domain	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR050151 all species →	Family	Class-I pyridine nucleotide-disulfide oxidoreductase	Interproscan
IPR016156 all species →	Homologous_superfamily	FAD/NAD-linked reductase, dimerisation domain superfamily	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22912 all species →	DISULFIDE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004148 all species →	Molecular Function	dihydrolipoyl dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045252 all species →	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for alvinactis_v1_g20167.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Alvinactis idsseensis sp. Nov. tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Alvinactis idsseensis sp. Nov., and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →